Mitochondrial genome structural variants and candidate cytoplasmic male sterility-related gene in sugarcane by Yihan Li, Shuangyu Li, Xiuting Hua, Yi Xu, Shuqi Chen, Zehuai Yu, Gui Zhuang, Yuhong Lan, Wei Yao, Baoshan Chen, Muqing Zhang, Jisen Zhang

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Systematic assessment of COVID-19 host genetics using whole genome sequencing data. by Axel Schmidt, Nicolas Casadei, Fabian Brand, German Demidov, Elaheh Vojgani, Ayda Abolhassani, Rana Aldisi, Guillaume Butler-Laporte, DeCOI host genetics group, T Madhusankha Alawathurage, Max Augustin, Robert Bals, Carla Bellinghausen, Marc Moritz Berger, Michael Bitzer, Christian Bode, Jannik Boos, Thorsten Brenner, Oliver A Cornely, Thomas Eggermann, Johanna Erber, Torsten Feldt, Christian Fuchsberger, Julien Gagneur, Siri Göpel, Tobias Haack, Helene Häberle, Frank Hanses, Julia Heggemann, Ute Hehr, Johannes C Hellmuth, Christian Herr, Anke Hinney, Per Hoffmann, Thomas Illig, Björn-Erik Ole Jensen, Verena Keitel, Sarah Kim-Hellmuth, Philipp Koehler, Ingo Kurth, Anna-Lisa Lanz, Eicke Latz, Clara Lehmann, Tom Luedde, Carlo Maj, Michael Mian, Abigail Miller, Maximilian Muenchhoff, Isabell Pink, Ulrike Protzer, Hana Rohn, Jan Rybniker, Federica Scaggiante, Anna Schaffeldt, Clemens Scherer, Maximilian Schieck, Susanne V Schmidt, Philipp Schommers, Christoph D Spinner, Maria J G T Vehreschild, Thirumalaisamy P Velavan, Sonja Volland, Sibylle Wilfling, Christof Winter, J Brent Richards, DeCOI, André Heimbach, Kerstin Becker, Stephan Ossowski, Joachim L Schultze, Peter Nürnberg, Markus M Nöthen, Susanne Motameny, Michael Nothnagel, Olaf Riess, Eva C Schulte, Kerstin U Ludwig

“…Here, we present the results of whole genome sequencing in 1,220 mainly vaccine-naïve individuals with confirmed SARS-CoV-2 infection, including 827 hospitalized COVID-19 cases. …”
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Genome analysis of Bifidobacterium adolescentis and investigation of its effects on inflammation and intestinal barrier function by Bo Li, Bo Li, Haoyu Wang, Haoyu Wang, Haoyu Wang, Mengmeng Wang, Mengmeng Wang, Hewei Liang, Hewei Liang, Hewei Liang, Tongyuan Hu, Tongyuan Hu, Tongyuan Hu, Jinlong Yang, Jinlong Yang, Jinlong Yang, Shangyong Li, Xinbi You, Xinbi You, Xinbi You, Binbin Xia, Binbin Xia, Binbin Xia, Yue Yuan, Yue Yuan, Yuanqiang Zou, Yuanqiang Zou, Yinglei Miao, Yinglei Miao, Yang Sun, Yang Sun, Yang Sun

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The genome sequence of Berberis vulgaris L. [version 1; peer review: 2 approved] by Markus Ruhsam

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Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper. by Faye Orcales, Lucy Moctezuma Tan, Meris Johnson-Hagler, John Matthew Suntay, Jameel Ali, Kristiene Recto, Phelan Glenn, Pleuni Pennings

“…It has been suggested that genomic sequencing and machine learning (ML) could make resistance testing more accurate and cost-effective. …”
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Plankton biogeography in the 21st century and impacts of climate change: advances through genomics by Frémont, Paul, Gehlen, Marion, Jaillon, Olivier

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The genomic architecture of circulating cytokine levels points to drug targets for immune-related diseases by Marek J. Konieczny, Murad Omarov, Lanyue Zhang, Rainer Malik, Tom G. Richardson, Sebastian-Edgar Baumeister, Jürgen Bernhagen, Martin Dichgans, Marios K. Georgakis

“…Exploring the genetic architecture of circulating cytokine levels could yield key insights into causal mediators of human disease. Here, we performed genome-wide association studies (GWAS) for 40 circulating cytokines in meta-analyses of 74,783 individuals. …”
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Comparative analysis of mitochondrial genomes from Buthidae (Scorpiones): gene rearrangement and phylogenetic implications by Wei Xu, Gaoji Zhang, Tangjun Xu, Ke He, Jiachen Wang, Zeyang Liu, Hongyi Liu

“…Scorpions, a diverse group of arachnids consisting of over 2,000 valid species, have received limited research attention in terms of their complete mitochondrial genomes (mitogenomes). To increase the taxonomic sampling frequency of species available for study based on mitogenomes, we reconstructed the complete mitogenomes of five scorpions, Androctonus amoreuxi (Audouin, 1826), Hottentotta tamulus (Fabricius, 1798), Leiurus quinquestriatus (Ehrenberg, 1828), Lychas mucronatus (Fabricius, 1798), and Teruelius flavopiceus (Kraepelin, 1900) within the family Buthidae. …”
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Characterization and genome analysis of a novel phage BP15 infecting Vibrio parahaemolyticus by Te-Ken Hsu, Yi-Yin Chen, Shiao-Wen Li, Hui-Yu Shih, Hsin-Yiu Chou, Jeff Chia-Kai Hsu, Han-Ching Wang, Li-Li Chen

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Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes. by Vladimir A Belyi, Arnold J Levine, Anna Marie Skalka

“…Vertebrate genomes contain numerous copies of retroviral sequences, acquired over the course of evolution. …”
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Genome sequencing enhances the diagnostic yield and expands the genetic landscape of male breast cancer by Wen Wen, Sen Zhao, Yiwen Jiang, Chengzhu Ou, Changyuan Guo, Ziqi Jia, Jiayi Li, Yansong Huang, Hengyi Xu, Pengming Pu, Tongxuan Shang, Lin Cong, Xiang Wang, Nan Wu, Jiaqi Liu

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Genome characterization through dichotomic classes: An analysis of the whole chromosome 1 of A. thaliana by Enrico Properzi, Simone Giannerini, Diego Luis Gonzalez, Rodolfo Rosa

“…In this article we show how dichotomic classes, binary variables naturally derived from a new mathematical model of the genetic code, can be used in order to characterize different parts of the genome. In particular, we analyze and compare different parts of whole chromosome 1 of Arabidopsis thaliana: genes, exons, introns, coding sequences (CDS), intergenes, untranslated regions (UTR) and regulatory sequences. …”
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The Use and Economic Value of the 3K SNP Genomic Test for Calves on Dairy Farms by Albert De Vries, David T. Galligan, John B. Cole

“…The availability of genomic tests is rapidly changing genetics in the dairy industry. …”
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Building a Genomics-Informed Nursing Workforce: Recommendations for Oncology Nursing Practice and Beyond by Jacqueline Limoges, Rebecca Puddester, Andrea Gretchev, Patrick Chiu, Kathy Calzone, Kathleen Leslie, April Pike, Nicole Letourneau

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Genomic Evidence for the Purging of Deleterious Genetic Variation in the Endangered North Atlantic Right Whale by Richard W. Orton, Philip K. Hamilton, Timothy R. Frasier

“…To better understand the links between deleterious genetic variation and population status, we assess patterns of genetic diversity, inbreeding, and mutation load across the genomes of three species of Balaenidae whale with different demographic histories and recoveries following the end of commercial whaling in the 1980s. …”
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Genome-Wide Association Study Identifies Candidate Loci Associated with Platelet Count in Koreans by Ji Hee Oh, Yun Kyoung Kim, Sanghoon Moon, Young Jin Kim, Bong-Jo Kim

Subjects: “…genome-wide association study…”
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CCL3L Copy number variation and the co-evolution of primate and viral genomes. by German Gornalusse, Srinivas Mummidi, Weijing He, Guido Silvestri, Mike Bamshad, Sunil K Ahuja

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Population Genomics Reveals Elevated Inbreeding and Accumulation of Deleterious Mutations in White Raccoon Dogs by Yinping Tian, Yu Lin, Yue Ma, Jiayi Li, Sunil Kumar Sahu, Jiale Fan, Chen Lin, Zhiang Li, Minhui Shi, Fengping He, Lianduo Bai, Yuan Fu, Zhangwen Deng, Huabing Guo, Haimeng Li, Qiye Li, Yanchun Xu, Tianming Lan, Zhijun Hou, Yanling Xia, Shuhui Yang

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Author Correction: Comparative genomics reveal a novel phylotaxonomic order in the genus Fusobacterium by Cristian Molteni, Diego Forni, Rachele Cagliani, Manuela Sironi

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Correction: Comparative organelle genomics in Daphniphyllaceae reveal phylogenetic position and organelle structure evolution by Rongxiang Zhang, Ying Liu, Shuwen Liu, Yuemei Zhao, Niyan Xiang, Xiaoman Gao, Tao Yuan

“…BMC Genomics…”
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