A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure by Silvia Gioiosa, Beatrice Chiavarini, Mattia D’Antonio, Giuseppe Trotta, Balasubramanian Chandramouli, Juan Mata Naranjo, Giuseppa Muscianisi, Mirko Cestari, Elisa Rossi

“…This solution has been successfully applied to the Network for Italian Genomes use-case, demonstrating scalability to other hospitals and universities involved in research projects dealing with sensitive genomic data.…”
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Comparative Study of <i>Phytolacca</i> Species Through Morphological, Chloroplast Genome, and Phylogenetic Analysis by Sumin Jeong, Yeseul Kim, Heewon Ji, Jun-Ho Song, Inkyu Park

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Design and implementation of an asynchronous online course-based undergraduate research experience (CURE) in computational genomics. by Seema B Plaisier, Danielle O Alarid, Joelle A Denning, Sara E Brownell, Kenneth H Buetow, Katelyn M Cooper, Melissa A Wilson

“…As genomics technologies advance, there is a growing demand for computational biologists trained for genomics analysis but instructors face significant hurdles in providing formal training in computer programming, statistics, and genomics to biology students. …”
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The GWAS-MAP|ovis platform for aggregation and analysis of genome-wide association study results in sheep by A. V. Kirichenko, A. S. Zlobin, T. I. Shashkova, N. A. Volkova, B. S. Iolchiev, V. A. Bagirov, P. M. Borodin, L. С. Karssen, Y. A. Tsepilov, Y. S. Aulchenko

Subjects: “…genome-wide association study…”
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First Molecular Identification and Whole Genome Sequencing of Listeria monocytogenes Isolated From an African Lion by Ping Xu, Xinyong Qi, Xiaoxu Wang, Feng Xu, Hongjin Zhao, Liping Shen, Yujie Zhang, Shixin Huang, Jian Wang

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Genomic Introgression Between Critically Endangered and Stable Species of Darwin's Tree Finches on the Galapagos Islands by Rachael Y. Dudaniec, Sonu Yadav, Julian Catchen, Sonia Kleindorfer

“…With single nucleotide polymorphism (SNP) data from the same Floreana tree finches sampled in 2005 and 2013 (n = 95), we examine genome‐wide divergence across parental and hybrid birds and evidence for selection in hybrids. …”
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Retraction Note: Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root-knot nematode by Georgios D. Koutsovoulos, Marine Poullet, Abdelnaser Elashry, Djampa K. L. Kozlowski, Erika Sallet, Martine Da Rocha, Laetitia Perfus-Barbeoch, Cristina Martin-Jimenez, Juerg Ernst Frey, Christian H. Ahrens, Sebastian Kiewnick, Etienne G. J. Danchin

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Practical Calling Approach for Exome Array-Based Genome-Wide Association Studies in Korean Population by Tae-Joon Park, Lyong Heo, Sanghoon Moon, Young Jin Kim, Ji Hee Oh, Sohee Han, Bong-Jo Kim

“…International Journal of Genomics…”
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Genome-resolved year-round dynamics reveal a broad range of giant virus microdiversity by Yue Fang, Lingjie Meng, Jun Xia, Yasuhiro Gotoh, Tetsuya Hayashi, Keizo Nagasaki, Hisashi Endo, Yusuke Okazaki, Hiroyuki Ogata

“…A newly developed computational pipeline generated 1,065 high-quality genomes covering six major giant virus lineages. These genomic data revealed year-round recovery of the viral community structure at the study site and distinct dynamics of viral populations that were classified as persistent (n = 9), seasonal (n = 389), sporadic (n = 318), or others. …”
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Genome-wide profiling of tRNA modifications by Induro-tRNAseq reveals coordinated changes by Yuko Nakano, Howard Gamper, Henri McGuigan, Sunita Maharjan, Jiatong Li, Zhiyi Sun, Erbay Yigit, Sebastian Grünberg, Keerthana Krishnan, Nan-Sheng Li, Joseph A. Piccirilli, Ralph Kleiner, Nicole Nichols, Brian D. Gregory, Ya-Ming Hou

“…Here we use Induro—a new group-II intron-encoded RT—to map and quantify genome-wide tRNA modifications in Induro-tRNAseq. …”
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Efficient genome editing in dicot plants using calreticulin promoter-driven CRISPR/Cas system by Bingjie Li, Yun Shang, Lixianqiu Wang, Jing Lv, Qi Wu, Fengjiao Wang, Jiangtao Chao, Jingjing Mao, Anming Ding, Xinru Wu, Kaili Xue, Chen Chen, Mengmeng Cui, Yuhe Sun, Huawei Zhang, Changbo Dai

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Importance of appropriate genome information for the design of mating type primers in black and yellow morel populations by Melissa Cravero, Aaron J. Robinson, Patrick Hilpisch, Patrick S. Chain, Saskia Bindschedler, Pilar Junier

“…This indicates an inherent fault in the original primer design which utilized a single Morchella genome, as the use of two genomes with complementary mating types would be required to design accurate primers for both idiomorphs. …”
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Genomic selection for resistance to one pathogenic strain of Vibrio splendidus in blue mussel Mytilus edulis by Munusamy Ajithkumar, Jonathan D’Ambrosio, Marie-Agnès Travers, Romain Morvezen, Lionel Degremont

“…Additionally, we performed a genome-wide association study (GWAS) to identify putative QTLs underlying disease resistance. …”
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COVFlow: phylodynamics analyses of viruses from selected SARS-CoV-2 genome sequences by Danesh, Gonché, Boennec, Corentin, Verdurme, Laura, Roussel, Mathilde, Trombert-Paolantoni, Sabine, Visseaux, Benoit, Haim-Boukobza, Stéphanie, Alizon, Samuel

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Genomic landscape and comparative analysis of tissue and liquid-based NGS in Taiwanese anaplastic thyroid carcinoma by Chun-Nan Yeh, Shu-Fu Lin, Chia-Ling Wu, Miaw-Jene Liou, I-Wen Chen, Chiao-Ping Chen, Ching-Fu Chang, Qi‑An Wang, Chiao-En Wu

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Biological Characteristics and Whole-Genome Analysis of a Porcine <i>E. coli</i> Phage by Shenghui Wan, Nana Li, Sajid Habib, Pei Zheng, Yanfang Li, Yan Liang, Yonggang Qu

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Whole-Genome Sequencing of Mexican Strains of Anaplasma marginale: An Approach to the Causal Agent of Bovine Anaplasmosis by Fernando Martínez-Ocampo, Rosa Estela Quiroz-Castañeda, Itzel Amaro-Estrada, Edgar Dantán-González, Jesús Francisco Preciado de la Torre, Sergio Rodríguez-Camarillo

“…International Journal of Genomics…”
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Detailed genetic analyses highlight genetic variation and genomic regions for lead tolerance in spring wheat by Amira M. I. Mourad, Amira M. I. Mourad, Ahmed Sallam, Ahmed Sallam, Khaled A. Farghaly, Andreas Börner

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Engineered CRISPR-Cas9 for Streptomyces sp. genome editing to improve specialized metabolite production by Duck Gyun Kim, Boncheol Gu, Yujin Cha, Jeonghan Ha, Yongjae Lee, Gahyeon Kim, Byung-Kwan Cho, Min-Kyu Oh

“…Abstract The CRISPR-Cas9 system has frequently been used for genome editing in Streptomyces; however, cytotoxicity, caused by off-target cleavage, limits its application. …”
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Genome-wide identification, characterization, and expression analysis of BZR transcription factor family in Gerbera hybrida by Qishan Luo, Gan Huang, Xiaohui Lin, Xiaojing Wang, Yaqin Wang

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