Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota) by Claudio G. Ametrano, Felix Grewe, Pedro W. Crous, Stephen B. Goodwin, Chen Liang, Laura Selbmann, H. Thorsten Lumbsch, Steven D. Leavitt, Lucia Muggia

“…We assembled phylogenomic datasets from newly sequenced (4) and previously available genomes (238) of 242 taxa. We explored the influence of tree inference methods, supermatrix vs. coalescent-based species tree, and the impact of varying amounts of genomic data. …”
Get full text

Dichotomous Effect of Caffeine, Curcumin, and Naringenin on Genomic DNA of Normal and Diabetic Subjects by Debarati Chattopadhyay, Ashok Somaiah, Divya Raghunathan, Kavitha Thirumurugan

Get full text

Molecular phylogeny and comparative chloroplast genome analysis of the type species Crucigenia quadrata by Ting Wang, Huan Feng, Huan Zhu, Bojian Zhong

Subjects: Get full text

slendr: a framework for spatio-temporal population genomic simulations on geographic landscapes by Petr, Martin, Haller, Benjamin C., Ralph, Peter L., Racimo, Fernando

“…To address this methodological gap, we present a new framework for simulating spatially-explicit genomic data, implemented in a new R package called slendr (www.slendr.net), which leverages a SLiM simulation back-end script bundled with the package. …”
Get full text

HaVec: An Efficient de Bruijn Graph Construction Algorithm for Genome Assembly by Md Mahfuzer Rahman, Ratul Sharker, Sajib Biswas, M. Sohel Rahman

“…International Journal of Genomics…”
Get full text

Population structure, selection signal and introgression of gamecocks revealed by whole genome sequencing by Naiyi Xu, Linyun Zhang, Feifan Chen, Zhengfu Feng, Jiangtao Zheng, DongHua Li, Yongju Zhao, Xiangtao Kang

Subjects: Get full text

Epidemiological and Genome-Wide Association Study of Gastritis or Gastric Ulcer in Korean Populations by Sumin Oh, Sejong Oh

“…Genomics & Informatics…”
Get full text

Genome editing using CRISPR/ Cas9 system: a practical guide by A. G. Menzorov, V. A. Lukyanchikova, A. N. Korablev, I. A. Serova, V. S. Fishman

Subjects: “…genome editing…”
Get full text

PHOTOPROBER® Biotin: An Alternative Method for Labeling Archival DNA for Comparative Genomic Hybridization by Dirk Korinth, Konrad Donhuijsen, Ulrike Bockmühl, Iver Petersen

“…Comparative genomic hybridization (CGH) represents a powerful method for screening the entire genome of solid tumors for chromosomal imbalances. …”
Get full text

Optical genome mapping: Unraveling complex variations and enabling precise diagnosis in dystrophinopathy by Jiahui Mai, Jing Duan, Xiaoyu Chen, Liqin Liu, Dachao Liang, Tao Fu, Gang Lu, Wai Yee Chan, Xufeng Luo, Feiqiu Wen, Jianxiang Liao, Zhuo Li, Xinguo Lu

“…Abstract Objective Approximately 7% of individuals with dystrophinopathy remain undiagnosed at the genetic level using conventional genetic tests like multiplex ligation‐dependent probe amplification (MLPA) and next‐generation sequencing (NGS). We used the optical genome mapping (OGM) technology to detect and analyze uncommon mutations or structural variations (SVs) within the DMD gene, thus contributing to more precise clinical diagnoses. …”
Get full text

Genome biology of long non-coding RNAs in humans: A virtual karyotype by Alessandro Palma, Giulia Buonaiuto, Monica Ballarino, Pietro Laneve

Subjects: Get full text

A novel lossless encoding algorithm for data compression–genomics data as an exemplar by Anas Al-okaily, Abdelghani Tbakhi

Subjects: Get full text

Chromosome-level genome assembly of the sweet potato rot nematode Ditylenchus destructor by Yiwei Yang, Ruirui Feng, Bo Hong, Yuchuan Fang, Chen Liu, Kui Wang, Deliang Peng, Yingmei Li, Huan Peng, Qing Chang

“…This high-quality reference genome will serve as a valuable genomic resource for future research aimed at understanding the pathogenesis of D. destructor and developing effective control strategies.…”
Get full text

Genomic Diversity and Potential Transmission and Persistence of Salmonella in the Cambodian Vegetable Supply Chain by Abimel Salazar, Navin Sreng, Chanthol Peng, Yehzi Fu, Erin M. Nawrocki, Taejung Chung, Jessie Vipham, Edward G. Dudley, Jasna Kovac

Get full text

Genomic Characterization of Carbapenemase-Producing Enterobacteriaceae from Clinical and Epidemiological Human Samples by Alexander Tristancho-Baró, Laura Eva Franco-Fobe, Monica Pilar Ariza, Ana Milagro, Ana Isabel López-Calleja, Blanca Fortuño, Concepción López, Miriam Latorre-Millán, Laura Clusa, Rosa Martínez, Carmen Torres, Antonio Rezusta

Subjects: Get full text

INVESTIGATION OF THE SPATIAL GENOME ORGANIZATION OF MOUSE SPERM AND FIBROBLASTS BY THE Hi-C METHOD by N. R. Battulin, V. S. Fishman, A. A. Khabarova, M. Yu. Pomaznoy, T. A. Shnaider, D. A. Afonnikov, O. L. Serov

Subjects: “…spatial genome organization…”
Get full text

Heritable human genome editing in South Africa – time for a reality check by M Ramsay, M Pepper, J de Vries, S Mahomed, E Flack-Davison

Subjects: “…Heritable human genome editing, reproductive cloning, National Health Research Ethics Council Guidelines, National Health Act, South Africa…”
Get full text

Comparative gametogenesis and genomic signatures associated with pollen sterility in the seedless mutant of grapevine by Siddhi Chavan, Satish Phalake, Sujata Tetali, Vitthal T. Barvkar, Ravindra Patil

“…This study represents a comprehensive attempt to identify putative candidate genes associated with parthenocarpic pollen sterility in grapes using genomic approaches.…”
Get full text

Genetic ancestry and the colonial legacies of race in genomics: a cross-disciplinary dialogue by Ernesto Schwartz-Marin, Tayyaba Jiwani, Sarah Abel, Yulia Egorova, Amade M’charek, Diogo Meyer, Andrés Moreno Estrada, Katharina Schramm, Peter Wade, Michel Naslavsky, Michel Naslavsky

“…This is despite the fact that geneticists broadly dismissed racial categories as obsolete and unfounded after the Human Genome Project was completed in 2003. In fact, contemporary genomics initiatives have often ended up reinforcing ethnocentric and nativist conceptions of difference, drawing intense criticism from activists and critical social scientists. …”
Get full text

Risk Prediction Using Genome-Wide Association Studies on Type 2 Diabetes by Sungkyoung Choi, Sunghwan Bae, Taesung Park

Subjects: Get full text