Analysis of Gene Expression in Human Dermal Fibroblasts Treated with Senescence-Modulating COX Inhibitors by Jeong A. Han, Jong-Il Kim

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Gene expression dataset of the blood clam Anadara kagoshimensis in relation to anoxic stressDDBJ by Kaito Hatano, Ryo Orita, Kei Kimura, Yukio Nagano, Nobuo Suzuki

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Transcriptomics profiling of Parkinson’s disease progression subtypes reveals distinctive patterns of gene expression by Carlo Fabrizio, Andrea Termine, Carlo Caltagirone

“…While their clinical features are already known, their gene expression profiles remain unexplored. Objectives The objectives of this study were (1) to describe the transcriptomics characteristics of three PD progression subtypes identified by AI, and (2) to evaluate if gene expression data can be used to predict disease subtype at baseline. …”
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The Effect of Laminin-1-Doped Nanoroughened Implant Surfaces: Gene Expression and Morphological Evaluation by Humberto Osvaldo Schwartz-Filho, Kostas Bougas, Paulo G. Coelho, Ying Xue, Mariko Hayashi, Rafael Silveira Faeda, Rosemary Adriana Chiérici Marcantonio, Daisuke Ono, Fumio Kobayashi, Kamal Mustafa, Ann Wennerberg, Ryo Jimbo

“…The protein-doped surface showed higher gene expression of typical genes involved in the osseointegration cascade than the control surface.…”
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Exercise Training Effects on Inflammatory Gene Expression in White Adipose Tissue of Young Mice by Tracy Baynard, Victoria J. Vieira-Potter, Rudy J. Valentine, Jeffrey A. Woods

“…Liver triglycerides and gene expression of F4/80, MCP-1, TNF-α, leptin, and VEGF in visceral white adipose were determined. …”
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Light-dependent variations in fatty acid profiles and gene expression in Antarctic microalgal cultures by Jacqui Stuart, Kirsty F. Smith, Matt Miller, John K. Pearman, Natalie Robinson, Lesley Rhodes, Lucy Thompson, Sarah Challenger, Nicole Parnell, Ken G. Ryan

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The Role of PPAR Ligands in Controlling Growth-Related Gene Expression and their Interaction with Lipoperoxidation Products by Mario Umberto Dianzani, Piergiorgio Pettazzoni, Angelo Cerbone, Stefania Pizzimenti, Cristina Toaldo, Giuseppina Barrera, Carlo Ferretti

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Integrated gene expression and alternative splicing analysis in human and mouse models of Rett syndrome by Silvia Gioiosa, Silvia Gasparini, Carlo Presutti, Arianna Rinaldi, Tiziana Castrignanò, Cecilia Mannironi

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Continuous and Discrete Similarity Coefficient for Identifying Essential Proteins Using Gene Expression Data by Jiancheng Zhong, Zuohang Qu, Ying Zhong, Chao Tang, Yi Pan

“…In this work, we discretized gene expression data and used the discrete similarities of the gene expression spectrum to eliminate noise fluctuation. …”
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Light-regulated microRNAs shape dynamic gene expression in the zebrafish circadian clock. by Zuo Wang, Shuang Wang, Yi Bi, Alessandra Boiti, Shengxiang Zhang, Daniela Vallone, Xianyong Lan, Nicholas S Foulkes, Haiyu Zhao

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Integrating representation learning, permutation, and optimization to detect lineage-related gene expression patterns by Hannah M. Schlüter, Caroline Uhler

“…Such datasets provide opportunities to compare gene expression memory maintenance through lineage branching and pinpoint critical genes in these processes. …”
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Nuclear talin-1 provides a bridge between cell adhesion and gene expression by Alejandro J. Da Silva, Hendrik S.E. Hästbacka, Mikael C. Puustinen, Jenny C. Pessa, Jens C. Luoto, Erika Sundström, Benjamin T. Goult, Guillaume Jacquemet, Eva Henriksson, Lea Sistonen

“…Importantly, small interfering RNA (siRNA)-mediated depletion of endogenous TLN1 triggers extensive changes in the gene expression profile of human breast epithelial cells. …”
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Gene Expression Profiling of the Sciatic Nerve in Streptozotocin-Induced Diabetic Rats with Peripheral Neuropathy by Yiji Tu, Zenggan Chen, Feng Zhang, Zhenglin Di, Junhui Zhang, Li Cai

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Correlation among blastocoel fluid DNA level, apoptotic genes expression and preimplantation aneuploidy by Fattaneh Khajehoseini, Zahra Noormohammadi, Poopak Eftekhari-Yazdi, Hamid Gourabi, Reza Pazhoomand, Shirzad Hosseinishenatal, Masood Bazrgar

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Mechanisms and therapeutic implications of gene expression regulation by circRNA-protein interactions in cancer by Nan Zhang, Xinjia Wang, Yu Li, Yiwei Lu, Chengcheng Sheng, Yumeng Sun, Ningye Ma, Yisheng Jiao

“…Studies have demonstrated that circRNAs can interact with RNA-binding proteins (RBPs), which play crucial roles in tumorigenesis, metastasis, and drug response in cancer by influencing gene expression and altering the processes of tumor initiation and progression. …”
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Differential Gene Expression Profile of Human Neutrophils Cultured with Plasmodium falciparum-Parasitized Erythrocytes by Mohamad Alaa Terkawi, Ryo Takano, Kentaro Kato

“…Results revealed that PMNs induced a broad and vigorous set of changes in gene expression in response to malarial parasites, represented by 118 upregulated and 216 downregulated genes. …”
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Extracellular electron transfer genes expressed by candidate flocking bacteria in cable bacteria sediment by Jamie J. M. Lustermans, Mantas Sereika, Laurine D. W. Burdorf, Mads Albertsen, Andreas Schramm, Ian P. G. Marshall

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A gene expression atlas of Nicotiana tabacum across various tissues at transcript resolution by Shizhou Yu, Jufen Wan, Jufen Wan, Tenghang Xu, Tenghang Xu, Jie Zhang, Linggai Cao, Jie Liu, Hongfeng Liu, Xueliang Ren, Zhixiao Yang

“…These findings not only reveal the diversity of gene expression in tobacco but also provide new insights and strategies for improving tobacco quality and resistance.…”
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Enhancement of superoxide dismutase gene expression in mice following the administration of cinnamon bark extract by Ahda Yuni, Rahma Mustika, Nilasari Ratna, Lyrawati Diana

“…This study shows that cinnamon extract (Cinnamomum zeylanicum) had a statistically significant effect (p < 0.05) on the upregulation of the superoxidase dismutase (SOD) gene expression in sperm (3.44) as well as liver cells (3,73) of male mice. …”
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Effectiveness of B-actin promoter on driving target gene expression in common carp transgenesis by Andi Aliah Hidayani, Odang Carman, . Alimuddin

“…The results demonstrated that homologous promoter more effective in driving of a target gene expression than that of heterologous promoter.  …”
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