Multiplexed transcriptomic analyzes of the plant embryonic hourglass by Hao Wu, Ruqiang Zhang, Karl J. Niklas, Michael J. Scanlon

“…In contrast, comparisons of embryonic gene expression among different animal phyla describe an inverse hourglass pattern, where expression is correlated during early and late stages but not during mid-embryo development. …”
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Carbon Black Particle Exhibits Size Dependent Toxicity in Human Monocytes by Devashri Sahu, G. M. Kannan, R. Vijayaraghavan

“…Gene expression study showed upregulation of monocyte chemoattractant protein-1 gene while cyclooxygenase-2 gene remained unaffected. …”
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Covariate-adjusted construction of gene regulatory networks using a combination of generalized linear model and penalized maximum likelihood. by Omid Chatrabgoun, Alireza Daneshkhah, Parisa Torkaman, Mark Johnston, Nader Sohrabi Safa, Ali Kashif Bashir

“…This construction can be improved using the auxiliary information like gene expression profile of the related species or gene markers. …”
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Genetic analysis of pathways regulated by the von Hippel-Lindau tumor suppressor in Caenorhabditis elegans. by Tammie Bishop, Kah Weng Lau, Andrew C R Epstein, Stuart K Kim, Min Jiang, Delia O'Rourke, Christopher W Pugh, Jonathan M Gleadle, Martin S Taylor, Jonathan Hodgkin, Peter J Ratcliffe

“…However, persisting differential gene expression in hif-1 versus hif-1; vhl-1 double mutant worms clearly distinguished HIF-1-independent effects of VHL-1 inactivation. …”
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Hepatitis E rORF2p Stimulated and Unstimulated Peripheral Expression Profiling in Patients with Self-Limiting Hepatitis E Infection by Sanjay B. Rathod, Anuradha S. Tripathy

“…The phenotypic expressions of key molecules CTLA-4, GITR, CD103, CD25, CD69, IL10 and TGF-β1 in the acute patients and TGF-β1 in the recovered individuals were significantly elevated on both unstimulated and stimulated PBMCs. Gene expression array data revealed upregulations of CD25, PD1, CD103, CCR4, IL10, and TGF-β1 on both unstimulated and HEV rORF2p stimulated PBMCs of acute patients. …”
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Trajectory inference from single-cell genomics data with a process time model. by Meichen Fang, Gennady Gorin, Lior Pachter

“…Single-cell transcriptomics experiments provide gene expression snapshots of heterogeneous cell populations across cell states. …”
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Role of Epigenetic Histone Modifications in Diabetic Kidney Disease Involving Renal Fibrosis by Jing Sun, Yangwei Wang, Wenpeng Cui, Yan Lou, Guangdong Sun, Dongmei Zhang, Lining Miao

“…These imply that epigenetic factors modulate kidney gene expression. There is evidence to suggest that in diabetes and hyperglycemia, epigenetic histone modifications have a significant effect in modulating renal fibrotic and ECM gene expression induced by TGF-β1, as well as its downstream profibrotic genes. …”
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Identification and Validation of a Novel Immune Infiltration-Based Diagnostic Score for Early Detection of Hepatocellular Carcinoma by Machine-Learning Strategies by Xuli Guo, Hailin Xiong, Shaoting Dong, Xiaobing Wei

“…To investigate the diagnostic gene biomarkers for hepatocellular carcinoma (HCC) and identify the immune cell infiltration characteristics in this pathology. Methods. Five gene expression datasets were obtained through Gene Expression Omnibus (GEO) portal. …”
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DYNAMICS OF IL12 CYTOKINE EXPRESSION IN HUMAN MACROPHAGES AFTER TREATMENT WITH DIOXIN by D. Y. Oshchepkov, E. V. Kashina, E. V. Antontseva, E. A. Oshchepkova, V. A. Mordvinov, D. P. Furman

“…In contrast, activation of IL12B gene expression with subsequent inhibition was noted. …”
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Administration of Iodine-125 Seeds Promotes Apoptosis in Cholangiocarcinoma through the PI3K/Akt Pathway by Junqing Lin, Leye Yan, Xiaolong Wang, Zhengzhong Wu, Kun Ke, Xin Lin, Ning Huang, Weizhu Yang

“…We aimed to examine the effects of 125I seeds on the gene expression of Bcl-2, Bax, and PI3K/Akt pathway components in cholangiocarcinoma cells. …”
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Microarray Profiling of Lymphocytes in Internal Diseases With an Altered Immune Response: Potential and Methodology by Anatoliy Gladkevich, S. Adriaan Nelemans, Henk F. Kauffman, Jakob Korf

“…Here we review alterations of gene expression in lymphocytes and methodological aspects of the microarray technique in these diseases. …”
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Differential Effects of Calorie Restriction and Exercise on the Adipose Transcriptome in Diet-Induced Obese Mice by Karrie E. Wheatley, Leticia M. Nogueira, Susan N. Perkins, Stephen D. Hursting

“…Relative to the DIO controls, both CR and EX reduced adiposity by 35–40% and serum leptin levels by 80%, but only CR increased adiponectin and insulin sensitivity. Gene expression microarray analysis of visceral white adipose tissue revealed 209 genes responsive to both CR and EX, relative to the DIO group. …”
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qDATA - an R application implementing a practical framework for analyzing quantitative real-time PCR data by Adrian Ionascu, Alexandru Al. Ecovoiu, Mariana Carmen Chifiriuc, Attila Cristian Ratiu

“…Gene expression assays that are based on quantitative real-time PCR (qRT-PCR) method are still very popular, therefore, we developed qDATA, an open-source R-based bioinformatics application that offers a quick and intuitive analysis of raw cycle threshold (Ct) values. …”
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LASSO-mCGA: Machine Learning and Modified Compact Genetic Algorithm-Based Biomarker Selection for Breast Cancer Subtype Classification by Nimisha Ghosh, Sankar Kumar Mridha, Rourab Paul

“…Being a heterogeneous disease, subtyping breast cancer plays a vital role in its treatment. In this regard, gene expression plays an important role. Thus, in this work gene expression data is used to identify the most significant gene biomarkers. …”
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Time-Space Translation: A Developmental Principle by A. J. Durston, H. J. Jansen, S. A. Wacker

“…., the NOM) of the Xenopus gastrula. This early Hox gene expression is transient, unless it is stabilized by signals from the SO. …”
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Variational graph autoencoder for reconstructed transcriptomic data associated with NLRP3 mediated pyroptosis in periodontitis by Pradeep K. Yadalam, Prabhu Manickam Natarajan, Carlos M. Ardila

“…The model’s latent space distribution differed significantly from the original data, suggesting a tightly clustered representation of the gene expression patterns. K-means clustering and VGAE show promise in gene expression analysis and graph structure reconstruction for periodontitis research.…”
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Heterosis: current advances in the search for molecular mechanisms by M. N. Shapturenko, L. V. Khotyleva

“…To date, differences in genome organization, gene expression and epigenetic status have been found between hybrids and their parents. …”
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Identification and Development of Synovial B-Cell-Related Genes Diagnostic Signature for Rheumatoid Arthritis by Jifeng Tang, Jinfang Xia, Huiming Sheng, Jinpiao Lin

“…The aim of the study was to investigate the landscape of B-cell-related gene expression profiling in rheumatoid arthritis (RA) synovium and explore the biological and clinical significance of these genes in RA. …”
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Pparg may Promote Chemosensitivity of Hypopharyngeal Squamous Cell Carcinoma by Meng Lian, Jiaming Chen, Xixi Shen, Lizhen Hou, Jugao Fang

“…We integrated large-scale literature data and HSCC gene expression data to identify regulatory pathways that link PPARG and chemosensitivity in HSCC. …”
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Differentially Expressed Genes Study Shown Potential for BCG Stimulation in Reducing the Severity of COVID-19 by Irandi Putra Pratomo, Aryo Tedjo, Dimas R Noor, Wisnu Ananta Kusuma

“…In this study, we used a differentially expressed genes (DEG) approach to analyze the genes modulated by BCG vaccination and COVID-19 infection. The Gene Expression Omnibus (GEO) database was used to select a COVID-19 gene expression data set with GSE164805, GSE14408, and GSE58636, and DEG in each data set were identified using the GEO2R online tools and selected using the adjusted p value (padj) 0.05 criteria. …”
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