Identification of Pseudoperonospora cubensis RxLR Effector Genes via Genome Sequencing by Rahel Dinsa Guta, Marc Semunyana, Saima Arif, Inyong Jeong, Sun Ha Kim, Jiyoung Min, Sang-Keun Oh

Subjects: “…Avr gene…”
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Nonlinear-Model-Based Analysis Methods for Time-Course Gene Expression Data by Li-Ping Tian, Li-Zhi Liu, Fang-Xiang Wu

“…Microarray technology has produced a huge body of time-course gene expression data and will continue to produce more. …”
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Species-Specific Gene, spt5, in the Qualitative and Quantitative Detection of Boletus reticulatus by Zhan Lei, Chen Zhang, Yinjiao Li, Lunzhao Yi, Ying Shang

“…Through sequence alignment, the spt5 gene was selected as the species-specific gene of B. reticulatus. …”
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Differences in Protein Expression and Gene Amplification of Cyclins between Colon and Rectal Adenocarcinomas by Rolf Aamodt, Kristin Jonsdottir, Solveig Norheim Andersen, Johan Bondi, Geir Bukholm, Ida R. K. Bukholm

“…Gene amplification and protein expression in the rectal cancers correlated significantly for the cyclins B1, D3, and E. …”
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Laser Irradiation Alters the Expression Profile of Genes Involved in the Extracellular Matrix In Vitro by Sandra M. Ayuk, Nicolette N. Houreld, Heidi Abrahamse

“…Real-time reverse transcription (RT) quantitative polymerase chain reaction (qPCR) was used to determine the expression of 84 genes in a PCR array. There was a significant upregulation of 29 genes in the normal cells, 32 genes in the normal wounded cells, and 18 genes in the diabetic wounded cells as well as a downregulation of 19 genes (normal), 6 genes (normal wounded), and 31 genes (diabetic wounded). …”
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The Platelet-Specific Gene Signature in the Immunoglobulin G4-Related Disease Transcriptome by Ali Kemal Oguz, Cagdas Sahap Oygur, Bala Gur Dedeoglu, Irem Dogan Turacli, Sibel Serin Kilicoglu, Ihsan Ergun

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Genetic Variants of Neurotransmitter-Related Genes and miRNAs in Egyptian Autistic Patients by Ahmed M. Salem, Samira Ismail, Waheba A. Zarouk, Olwya Abdul Baky, Ahmed A. Sayed, Sawsan Abd El-Hamid, Sohair Salem

“…This work studied the association of autism with genetic variations in neurotransmitter-related genes, including MAOA uVNTR, MAOB rs1799836, and DRD2 TaqI A in 53 autistic patients and 30 healthy individuals. …”
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Identification of a distinctive immunogenomic gene signature in stage-matched colorectal cancer by Pankaj Ahluwalia, Ashis K. Mondal, Ashutosh Vashisht, Harmanpreet Singh, Ahmet Alptekin, Kalyani Ballur, Nivin Omar, Meenakshi Ahluwalia, Kimya Jones, Amanda Barrett, Vamsi Kota, Ravindra Kolhe

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Differential Effects of Alpha-Particle Radiation and X-Irradiation on Genes Associated with Apoptosis by Vinita Chauhan, Matthew Howland, Jeremy Chen, Barbara Kutzner, Ruth C. Wilkins

“…Among these 6 genes, Fas and TNF-α were common to the α-irradiated cells. …”
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Construction of Gene Regulatory Networks Using Recurrent Neural Networks and Swarm Intelligence by Abhinandan Khan, Sudip Mandal, Rajat Kumar Pal, Goutam Saha

“…We have proposed a methodology for the reverse engineering of biologically plausible gene regulatory networks from temporal genetic expression data. …”
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Identification and Verification of Hub Mitochondrial Dysfunction Genes in Osteoarthritis Based on Bioinformatics Analysis by Hui Niu, Xingxing Deng, Qian Zhang, Yijun Zhao, Jinfeng Wen, Wenyu Li, Huan Liu, Xiong Guo, Cuiyan Wu

“…Gene ontology (GO) and Kyoto encyclopedia of genes and genomes pathways were analyzed for DEMDFGs. …”
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Contextualization of Trait Nexus and Gene Action for Quantitative and Qualitative Characteristics in Indian Mustard by Sumanta Prasad Chand, Sandip Debnath, Mehdi Rahimi, Mohd. Shaikhul Ashraf, Pankaj Bhatt, Saima Ahmed Rahin

“…Appropriate parent selection and analyzing gene action contribute to economic benefit maximization. …”
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Predicting microRNA target genes using pan-cancer correlation patterns by Shuting Lin, Peng Qiu

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Phylogenetic, Expression, and Bioinformatic Analysis of the ABC1 Gene Family in Populus trichocarpa by Zhanchao Wang, Haizhen Zhang, Jingli Yang, Yunlin Chen, Xuemei Xu, Xuliang Mao, Chenghao Li

“…We studied 17 ABC1 genes in Populus trichocarpa, all of which contained an ABC1 domain consisting of about 120 amino acid residues. …”
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Gene Expression Profile Analysis in Epilepsy by Using the Partial Least Squares Method by Dong Wang, Xixiao Song, Yan Wang, Xia Li, Shanshan Jia, Zhijing Wang

“…Two microarray data sets were downloaded from the Gene Expression Omnibus (GEO) database. PLS analysis was used to identify differentially expressed genes. …”
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Gene Expression Pattern and Regulatory Network of α-Toxin Treatment in Bombyx mori by Tieshan Feng, Ping Lin, Jiao Gong, Dong Cheng, Xi Yang, Quan Zhang, Tingcai Cheng

“…Further, genes encoding cecropins were enriched in the fatbody. …”
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Comparative genomics of Botryosphaeria dothidea and B. kuwatsukai, causal agents of apple ring rot, reveals both species expansion of pathogenicity-related genes and variations in virulence gene content during speciation by Bo Wang, Xiaofei Liang, Mark L. Gleason, Rong Zhang, Guangyu Sun

“…Botryosphaeria kuwatsukai, which infects only apple and pear, apparently lost a set of SMs genes, CAZYs and PCWDEs, possibly as a result of host specialization. …”
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Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry by Lydia Freddolino, Jamie Yang, Amir Momen-Roknabadi, Saeed Tavazoie

Subjects: “…gene regulation…”
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Coagulase gene and agr complex polymorphism-based genotyping of <i>Staphylococcus aureus</i> isolated from non-human primates by V. A. Kalashnikova

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PlantReg: the reconstruction of links between transcription factor regulatory networks and biological processes under their control by V. V. Lavrekha, N. A. Omelyanchuk, A. G. Bogomolov, E. V. Zemlyanskaya

Subjects: “…gene ontology…”
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