Mem-based pangenome indexing for k-mer queries by Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead

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Comparative Genomic Analysis of Tigecycline Resistance Development in Clinical Acinetobacter baumannii Isolates by Li X, Liu J, Zhang X, Li J, Xuan L, Yuan S, Li J, Sun Y, Du X

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Comparative genomic analysis of a novel heat-tolerant and euryhaline strain of unicellular marine cyanobacterium Cyanobacterium sp. DS4 from a high-temperature lagoon by Ching-Nen Nathan Chen, Keng-Min Lin, Yu-Chen Lin, Hsin-Ying Chang, Tze Ching Yong, Yi-Fang Chiu, Chih-Horng Kuo, Hsiu-An Chu

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Blastn2dotplots: multiple dot-plot visualizer for genome comparisons by Miki Okuno, Takeshi Yamamoto, Yoshitoshi Ogura

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Intraspecific Variation and Recent Loss of Ancient, Conserved Effector Genes in the Sudden Oak Death Pathogen Phytophthora ramorum by Nicholas C. Cauldron, Caroline M. Press, Alexandra J. Weisberg, Marília Horta Jung, Tamara Corcobado, Joan F. Webber, Koji Kageyama, Ayaka Hieno, Hayato Masuya, Seiji Uematsu, Bruno Scanu, Clive M. Brasier, Thomas Jung, Jeff H. Chang, Niklaus J. Grünwald

Subjects: “…comparative genomics…”
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The Complete Chloroplast Genome Sequence of Callisia fragrans (Lindl.) Woodson (Commelinaceae) by Khang Vo‐Tan, Van Truong Thi Bich, Men Tran Thanh, Tai Tran Tien, Hoang Dang Khoa Do, Ngoc‐Van Thi Nguyen

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Gene-trait matching among Bifidobacterium dentium strains reveals various glycan metabolism loci including a strain-specific fucosyllactose utilization cluster by Ortensia Catalano Gonzaga, Ortensia Catalano Gonzaga, Stephen McKenna, Ian O’Neill, Ian O’Neill, Paul D. Cotter, Paul D. Cotter, Fionnuala M. McAuliffe, Aidan Coffey, Aidan Coffey, Douwe van Sinderen, Douwe van Sinderen, Francesca Bottacini, Francesca Bottacini

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Mycobacteroides abscessus subspecies: a comparative genomic analysis reveals unique metabolic activities and drug resistance patterns by Xiaoyu Wang, Yongdong Dai, Xiao Wang, Lingfei Li, Yanhai Feng, Shunying Liu, Zhenyu Kou, Liang Wang, Fangjie Wang, Yaokai Chen, Xia Lei

Subjects: “…Comparative genomics…”
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The first complete mitochondrial genome of Curcuma amarissima (Zingiberaceae): insights into multi-branch structure, codon usage, and phylogenetic evolution by Heng Liang, Jiabin Deng, Yidan Wang, Gang Gao, Ruiwu Yang

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Comparative genomics analysis of Bacillus altitudinis G03 provides insights into its biocontrol and probiotic traits by Dongli Chen, Jie Lin, Yongen Yan, Jiang Pi, Jun-Fa Xu, Lingming Chen

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Comparative analysis of mitochondrial genomes in lycoperdaceae fungi reveals intron dynamics and phylogenetic relationships by Xianyi Wang, Guoyu Wang, Jiawei Tao, Zhongyao Guo, Guangyin Xu, Jiayu Li, Jichuan Kang, Qin Zuo, Hongmei Liu, Qirui Li

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Degradation of lignocellulose by different bacterial and fungal co-cultures by Julian Detain, Ludovic Besaury

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Comparative genomics of Aspergillus nidulans and section Nidulantes by Sebastian Theobald, Tammi Vesth, Jane L. Nybo, Jens C. Frisvad, Inge Kjærbølling, Stephen Mondo, Kurt LaButti, Sajeet Haridas, Robert Riley, Alan A. Kuo, Asaf A. Salamov, Jasmyn Pangilinan, Anna Lipzen, Maxim Koriabine, Mi Yan, Kerrie Barry, Alicia Clum, Ellen K. Lyhne, Elodie Drula, Ad Wiebenga, Astrid Müller, Ronnie J.M. Lubbers, Roland S. Kun, Ana Carolina dos Santos Gomes, Miia R. Mäkelä, Bernard Henrissat, Blake A. Simmons, Jon K. Magnuson, Jakob B. Hoof, Uffe H. Mortensen, Paul S. Dyer, Michelle Momany, Thomas O. Larsen, Igor V Grigoriev, Scott E. Baker, Ronald P. de Vries, Mikael R. Andersen

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The Complete Chloroplast Genome of Erythrina variegata L. (Papilionoideae, Fabaceae) by Nguyen Nhat Nam, Nguyen Ngoc Trai, Nguyen Phuong Thuy, Le Quoc Duy, Pham Nguyen Tuong Van, Tan Tai Nguyen, Hoang Dang Khoa Do

Subjects: “…comparative genomics…”
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Strain-specific effect of Streptococcus thermophilus consumption on host physiology by Peng Yu, Yang Jiang, Yuqi Pan, Min Guo, Bo Yang, Xiaoming Liu, Jianxin Zhao, Hao Zhang, Wei Chen

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Plastome comparison and phylogenomics of Chinese endemic Schnabelia (Lamiaceae): insights into plastome evolution and species divergence by Shengnan Wei, Jianan Ying, Mengxia Lu, Jie Li, Yanbo Huang, Zhenming Wu, Paul Nevill, Pan Li, Xinjie Jin, Qixiang Lu

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Plaseval: a framework for comparing and evaluating plasmid detection tools by Aniket Mane, Haley Sanderson, Aaron P. White, Rahat Zaheer, Robert Beiko, Cédric Chauve

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Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage by Bo Feng, Yonglin Li, Biyang Xu, Hongyue Liu, Jacob L Steenwyk, Kyle T David, Xiaolin Tian, Carla Gonçalves, Dana A Opulente, Abigail L LaBella, Marie-Claire Harrison, John F Wolters, Shengyuan Shao, Zhaohao Chen, Kaitlin J Fisher, Marizeth Groenewald, Chris Todd Hittinger, Xing-Xing Shen, Shengying Li, Antonis Rokas, Xiaofan Zhou, Yuanning Li

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Comparative Genomics Reveals Gene Duplication and Evolution in 26 Aurantioideae Species by Jiaxuan Liu, Jiaxin Wu, Saimire Silaiyiman, Lejun Ouyang, Zheng Cao, Chao Shen

Subjects: “…comparative genomics…”
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Black fungi and ants: a genomic comparison of species inhabiting carton nests versus domatia by Yu Quan, Nickolas Menezes da Silva, Bruna Jacomel Favoreto de Souza Lima, Sybren de Hoog, Vania Aparecida Vicente, Veronika Mayer, Yingqian Kang, Dongmei Shi

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