Challenges of reproducible AI in biomedical data science by Henry Han

“…Abstract Artificial intelligence (AI) is revolutionizing biomedical data science at an unprecedented pace, transforming various aspects of the field with remarkable speed and depth. …”
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A quantitative spatial cell-cell colocalizations framework enabling comparisons between in vitro assembloids and pathological specimens by Gina Bouchard, Weiruo Zhang, Ilayda Ilerten, Irene Li, Asmita Bhattacharya, Yuanyuan Li, Winston Trope, Joseph B. Shrager, Calvin Kuo, Michael G. Ozawa, Amato J. Giaccia, Lu Tian, Sylvia K. Plevritis

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regionalpcs improve discovery of DNA methylation associations with complex traits by Tiffany Eulalio, Min Woo Sun, Olivier Gevaert, Michael D. Greicius, Thomas J. Montine, Daniel Nachun, Stephen B. Montgomery

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A scoping review of privacy and utility metrics in medical synthetic data by Bayrem Kaabachi, Jérémie Despraz, Thierry Meurers, Karen Otte, Mehmed Halilovic, Bogdan Kulynych, Fabian Prasser, Jean Louis Raisaro

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Transcriptome-wide association study identifies genes associated with bladder cancer risk by Siting Li, Jiang Gui, Margaret R. Karagas, Michael N. Passarelli

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Clinical entity augmented retrieval for clinical information extraction by Ivan Lopez, Akshay Swaminathan, Karthik Vedula, Sanjana Narayanan, Fateme Nateghi Haredasht, Stephen P. Ma, April S. Liang, Steven Tate, Manoj Maddali, Robert Joseph Gallo, Nigam H. Shah, Jonathan H. Chen

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Machine Learning Enabled Prediction of Biologically Relevant Gene Expression Using CT‐Based Radiomic Features in Non‐Small Cell Lung Cancer by Shrey S. Sukhadia, Christoph Sadée, Olivier Gevaert, Shivashankar H. Nagaraj

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Advances in Biomedical Missing Data Imputation: A Survey by Miriam Barrabes, Maria Perera, Victor Novelle Moriano, Xavier Giro-I-Nieto, Daniel Mas Montserrat, Alexander G. Ioannidis

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Lymph Node Adiposity and Metabolic Dysfunction-Associated Steatotic Liver Disease by Jessica M. Rubino, Natalie Yanzi Ring, Krishna Patel, Xiaoqing Xia, Todd A. MacKenzie, Roberta M. diFlorio-Alexander

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Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data by Guanao Yan, Shuo Harper Hua, Jingyi Jessica Li

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Deep learning uncovers histological patterns of YAP1/TEAD activity related to disease aggressiveness in cancer patients by Benoit Schmauch, Vincent Cabeli, Omar Darwiche Domingues, Jean-Eudes Le Douget, Alexandra Hardy, Reda Belbahri, Charles Maussion, Alberto Romagnoni, Markus Eckstein, Florian Fuchs, Aurélie Swalduz, Sylvie Lantuejoul, Hugo Crochet, François Ghiringhelli, Valentin Derangere, Caroline Truntzer, Harvey Pass, Andre L. Moreira, Luis Chiriboga, Yuanning Zheng, Michael Ozawa, Brooke E. Howitt, Olivier Gevaert, Nicolas Girard, Elton Rexhepaj, Iris Valtingojer, Laurent Debussche, Emanuele de Rinaldis, Frank Nestle, Emmanuel Spanakis, Valeria R. Fantin, Eric Y. Durand, Marion Classe, Katharina Von Loga, Elodie Pronier, Matteo Cesaroni

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Bayesian hierarchical network autocorrelation models for estimating direct and indirect effects of peer hospitals on outcomes of hospitalized patients by Guanqing Chen, A. James O’Malley

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Exploring RNA-Seq Data Analysis Through Visualization Techniques and Tools: A Systematic Review of Opportunities and Limitations for Clinical Applications by Farhana Manzoor, Cyruss A. Tsurgeon, Vibhuti Gupta

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Radiofrequency ablation of hepatocellular carcinoma guided by real-time physics-based ablation simulation: a prospective study by Eric K. Hoffer, Mary C. Drinane, Vikrant Bhatnagar, Riya Mehta, David P. Munger, Andrea Borsic

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Association between the Taq1A polymorphism and problematic media use in preadolescent children by Jennifer A. Emond, Jennifer A. Emond, Timothy J. Renier, Dabin Yeum, Delaina D. Carlson, Grace A. Ballarino, Diane Gilbert-Diamond, Diane Gilbert-Diamond, Diane Gilbert-Diamond

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Insulin resistance compromises midbrain organoid neuronal activity and metabolic efficiency predisposing to Parkinson’s disease pathology by Alise Zagare, Janis Kurlovics, Catarina Almeida, Daniele Ferrante, Daniela Frangenberg, Armelle Vitali, Gemma Gomez-Giro, Christian Jäger, Paul Antony, Rashi Halder, Rejko Krüger, Enrico Glaab, Egils Stalidzans, Giuseppe Arena, Jens C Schwamborn

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Associations between accurate measures of adiposity and fitness, blood proteins, and insulin sensitivity among South Asians and Europeans by Pik Fang Kho, Pik Fang Kho, Laurel Stell, Shirin Jimenez, Shirin Jimenez, Daniela Zanetti, Daniela Zanetti, Daniela Zanetti, Daniel J. Panyard, Kathleen L. Watson, Ashish Sarraju, Ashish Sarraju, Ming-Li Chen, Ming-Li Chen, Lars Lind, John R. Petrie, Khin N. Chan, Holly Fonda, Kyla Kent, Kyla Kent, Jonathan N. Myers, Jonathan N. Myers, Jonathan N. Myers, Latha Palaniappan, Latha Palaniappan, Latha Palaniappan, Fahim Abbasi, Themistocles L. Assimes, Themistocles L. Assimes, Themistocles L. Assimes, Themistocles L. Assimes

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Exploring the therapeutic effect of human recombinant IL11 on lesioned OA human osteochondral explants by Margo Tuerlings, Evelyn Houtman, Elisa J.H. Muusers, Janneke Simon, Maurice W. de Haan, Ilja Boone, Yolande F.M. Ramos, Rachid Mahdad, Ingrid Meulenbelt

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TILTomorrow today: dynamic factors predicting changes in intracranial pressure treatment intensity after traumatic brain injury by Shubhayu Bhattacharyay, Florian D. van Leeuwen, Erta Beqiri, Cecilia A. I. Åkerlund, Lindsay Wilson, Ewout W. Steyerberg, David W. Nelson, Andrew I. R. Maas, David K. Menon, Ari Ercole, the CENTER-TBI investigators and participants

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Sulforaphane acutely activates multiple starvation response pathways by Kendra S. Plafker, Constantin Georgescu, Nathan Pezant, Atul Pranay, Scott M. Plafker

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