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    freeQuant: A Mass Spectrometry Label-Free Quantification Software Tool for Complex Proteome Analysis by Ning Deng, Zhenye Li, Chao Pan, Huilong Duan

    Published 2015-01-01
    “…In this paper, we present a mass spectrometry label-free quantification tool for complex proteomes, called freeQuant, which integrated quantification with functional analysis effectively. freeQuant consists of two well-integrated modules: label-free quantification and functional analysis with biomedical knowledge. freeQuant supports label-free quantitative analysis which makes full use of tandem mass spectrometry (MS/MS) spectral count, protein sequence length, shared peptides, and ion intensity. …”
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