Metadag: a web tool to generate and analyse metabolic networks by Pere Palmer-Rodríguez, Ricardo Alberich, Mariana Reyes-Prieto, José A. Castro, Mercè Llabrés

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A comprehensive survey of scoring functions for protein docking models by Azam Shirali, Vitalii Stebliankin, Ukesh Karki, Jimeng Shi, Prem Chapagain, Giri Narasimhan

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BAC-browser: the tool for synthetic biology by Tatiana A. Semashko, Gleb Y. Fisunov, Georgiy Y. Shevelev, Vadim M. Govorun

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A graph neural network approach for hierarchical mapping of breast cancer protein communities by Xiao Zhang, Qian Liu

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A multi-stage weakly supervised design for spheroid segmentation to explore mesenchymal stem cell differentiation dynamics by Arash Shahbazpoor Shahbazi, Farzin Irandoost, Reza Mahdavian, Seyedehsamaneh Shojaeilangari, Abdollah Allahvardi, Hossein Naderi-Manesh

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HDN-DDI: a novel framework for predicting drug-drug interactions using hierarchical molecular graphs and enhanced dual-view representation learning by Jinchen Sun, Haoran Zheng

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Joint embedding–classifier learning for interpretable collaborative filtering by Clémence Réda, Jill-Jênn Vie, Olaf Wolkenhauer

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End-to-end 3D instance segmentation of synthetic data and embryo microscopy images with a 3D Mask R-CNN by Gabriel David, Emmanuel Faure

“…Frontiers in Bioinformatics…”
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CDPMF-DDA: contrastive deep probabilistic matrix factorization for drug-disease association prediction by Xianfang Tang, Yawen Hou, Yajie Meng, Zhaojing Wang, Changcheng Lu, Juan Lv, Xinrong Hu, Junlin Xu, Jialiang Yang

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Accurate assembly of full-length consensus for viral quasispecies by Jia Tian, Ziyu Gao, Minghao Li, Ergude Bao, Jin Zhao

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A novel lossless encoding algorithm for data compression–genomics data as an exemplar by Anas Al-okaily, Abdelghani Tbakhi

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Hybrid generative adversarial network based on frequency and spatial domain for histopathological image synthesis by Qifeng Liu, Tao Zhou, Chi Cheng, Jin Ma, Marzia Hoque Tania

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UniAMP: enhancing AMP prediction using deep neural networks with inferred information of peptides by Zixin Chen, Chengming Ji, Wenwen Xu, Jianfeng Gao, Ji Huang, Huanliang Xu, Guoliang Qian, Junxian Huang

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Flexible analysis of spatial transcriptomics data (FAST): a deconvolution approach by Meng Zhang, Joel Parker, Lingling An, Yiwen Liu, Xiaoxiao Sun

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Instance-level semantic segmentation of nuclei based on multimodal structure encoding by Bo Guan, Guangdi Chu, Ziying Wang, Jianmin Li, Bo Yi

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Development of a TSR-based method for understanding structural relationships of cofactors and local environments in photosystem I by Lujun Luo, Tarikul I. Milon, Elijah K. Tandoh, Walter J. Galdamez, Andrei Y. Chistoserdov, Jianping Yu, Jan Kern, Yingchun Wang, Wu Xu

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Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation by Mikhail Arbatsky, Ekaterina Vasilyeva, Veronika Sysoeva, Ekaterina Semina, Ekaterina Semina, Valeri Saveliev, Kseniya Rubina

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Adaptive deep feature representation learning for cross-subject EEG decoding by Shuang Liang, Linzhe Li, Wei Zu, Wei Feng, Wenlong Hang

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Correcting scale distortion in RNA sequencing data by Christopher Thron, Farhad Jafari

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scSMD: a deep learning method for accurate clustering of single cells based on auto-encoder by Xiaoxu Cui, Renkai Wu, Yinghao Liu, Peizhan Chen, Qing Chang, Pengchen Liang, Changyu He

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