Accurate assembly of full-length consensus for viral quasispecies by Jia Tian, Ziyu Gao, Minghao Li, Ergude Bao, Jin Zhao

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A novel lossless encoding algorithm for data compression–genomics data as an exemplar by Anas Al-okaily, Abdelghani Tbakhi

“…Frontiers in Bioinformatics…”
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Hybrid generative adversarial network based on frequency and spatial domain for histopathological image synthesis by Qifeng Liu, Tao Zhou, Chi Cheng, Jin Ma, Marzia Hoque Tania

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Flexible analysis of spatial transcriptomics data (FAST): a deconvolution approach by Meng Zhang, Joel Parker, Lingling An, Yiwen Liu, Xiaoxiao Sun

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Instance-level semantic segmentation of nuclei based on multimodal structure encoding by Bo Guan, Guangdi Chu, Ziying Wang, Jianmin Li, Bo Yi

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Development of a TSR-based method for understanding structural relationships of cofactors and local environments in photosystem I by Lujun Luo, Tarikul I. Milon, Elijah K. Tandoh, Walter J. Galdamez, Andrei Y. Chistoserdov, Jianping Yu, Jan Kern, Yingchun Wang, Wu Xu

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Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation by Mikhail Arbatsky, Ekaterina Vasilyeva, Veronika Sysoeva, Ekaterina Semina, Ekaterina Semina, Valeri Saveliev, Kseniya Rubina

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Correcting scale distortion in RNA sequencing data by Christopher Thron, Farhad Jafari

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scSMD: a deep learning method for accurate clustering of single cells based on auto-encoder by Xiaoxu Cui, Renkai Wu, Yinghao Liu, Peizhan Chen, Qing Chang, Pengchen Liang, Changyu He

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Direct coupling analysis and the attention mechanism by Francesco Caredda, Andrea Pagnani

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Zim4rv: an R package to modeling zero-inflated count phenotype on regional-based rare variants by Xiaomin Liu, Yi-Ju Li, Qiao Fan

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Conditional similarity triplets enable covariate-informed representations of single-cell data by Chi-Jane Chen, Haidong Yi, Natalie Stanley

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Correction: HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes by Thomas M. Adams, Moray Smith, Yuhan Wang, Lynn H. Brown, Micha M. Bayer, Ingo Hein

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MDFGNN-SMMA: prediction of potential small molecule-miRNA associations based on multi-source data fusion and graph neural networks by Jianwei Li, Xukun Zhang, Bing Li, Ziyu Li, Zhenzhen Chen

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getphylo: rapid and automatic generation of multi-locus phylogenetic trees by T. J. Booth, S. Shaw, P. Cruz-Morales, T. Weber

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Omilayers: a Python package for efficient data management to support multi-omic analysis by Dimitrios Kioroglou

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TockyPrep: data preprocessing methods for flow cytometric fluorescent timer analysis by Masahiro Ono

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Benchmarking cell type annotation methods for 10x Xenium spatial transcriptomics data by Jinming Cheng, Xinyi Jin, Gordon K. Smyth, Yunshun Chen

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HISS: Snakemake-based workflows for performing SMRT-RenSeq assembly, AgRenSeq and dRenSeq for the discovery of novel plant disease resistance genes by Thomas M. Adams, Moray Smith, Yuhan Wang, Lynn H. Brown, Micha M. Bayer, Ingo Hein

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Biomedical named entity recognition using improved green anaconda-assisted Bi-GRU-based hierarchical ResNet model by Ram Chandra Bhushan, Rakesh Kumar Donthi, Yojitha Chilukuri, Ulligaddala Srinivasarao, Polisetty Swetha

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