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561
Comprehensive Analysis of the Mechanism of Anoikis in Hepatocellular Carcinoma
Published 2024-01-01“…This paper’s data (TCGA-HCC) were retrieved from the database of the Cancer Genome Atlas (TCGA). Differential gene expression with prognostic implications for anoikis was identified by performing both the univariate Cox and differential expression analyses. …”
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562
Providing an Anti-Marketing Model to Prevent Criminal Behaviors in Online and Digital Businesses
Published 2024-06-01“…Ultimately, employing ATLAS.ti software, “the anti-marketing model aimed at preventing criminal behaviors in the online business environment” was derived. …”
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563
Single-cell transcriptomics reveals novel chondrocyte and osteoblast subtypes and their role in knee osteoarthritis pathogenesis
Published 2025-02-01“…Therefore, this study constructed a bipedal postmenopausal KOA mouse model to better understand how the interplay between subchondral bone remodeling and cartilage degeneration contributes to KOA development. A single-cell atlas of the osteochondral composite tissue was established. …”
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564
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565
Activin levels correlate with lymphocytic infiltration in epithelial ovarian cancer
Published 2024-09-01“…Immune gene expression profile was further explored within the TCGA‐OV cohort derived from The Cancer Genome Atlas (TCGA). Immunohistochemical analysis was performed to evaluate activin A and T‐cell markers CD8 and FoxP3 at the protein level. …”
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566
Expression of CSTF2 in oral squamous cell carcinoma and its relationship with immune infiltration and poor prognosis
Published 2025-02-01“…However, its specific association with patient prognosis and immune cell infiltration in OSCC remains insufficiently understood.MethodsTo assess the expression levels and prognostic implications of CSTF2 in OSCC, comprehensive data were acquired from The Cancer Genome Atlas (TCGA) and subsequently normalized. Immunohistochemical staining of tissue microarrays was performed to analyze CSTF2 expression in the OSCC samples. …”
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567
Identification of Survival Risk and Immune-Related Characteristics of Kidney Renal Clear Cell Carcinoma
Published 2022-01-01“…A series of information such as RNA sequence, clinical data, and tumor mutation burden (TMB) of KIRC patients were downloaded through The Cancer Genome Atlas (TCGA). Next, combining the survival information and gene expression data of TCGA and Gene Expression Omnibus (GEO), we established an immune gene-related prognosis model (IGRPM) and analyzed it. …”
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568
Single-cell transcriptomes of dissecting the intra-tumoral heterogeneity of breast cancer microenvironment
Published 2024-12-01“…Conclusion We constructed a comprehensive single-cell transcriptome atlas of 54,055 cells from 4 malignant and 4 nonmalignant patients, providing insights into the mechanisms underlying breast cancer progression and the development of potential therapeutic strategies in breast cancer.…”
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569
Predicting Outcomes in Esophageal Squamous Cell Carcinoma Using scRNA‐Seq and Bulk RNA‐Seq: A Model Development and Validation Study
Published 2025-01-01“…Methods A total of 8, 99, and 140 individuals from The Gene Expression Omnibus database, The Cancer Genome Atlas database, and the Memorial Sloan Kettering Cancer Center, respectively, were encompassed in the investigation. …”
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570
Tumour DNA methylation markers associated with breast cancer survival: a replication study
Published 2025-01-01“…Candidate methylation sites (N = 22) and signatures (N = 3) potentially associated with breast cancer survival were identified from five prior studies that used The Cancer Genome Atlas (TCGA) methylation dataset, which shares key characteristics with the MCCS: comparable sample size, tissue type (formalin-fixed paraffin-embedded; FFPE), technology (Illumina HumanMethylation450 array), and participant characteristics (age, ancestry, and disease subtype and severity). …”
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571
Heterogeneous Acupuncture Effects of Taixi (KI3) on Functional Connectivity in Healthy Youth and Elder: A Functional MRI Study Using Regional Homogeneity and Large-Scale Functional...
Published 2020-01-01“…Regional homogeneity (ReHo) and large-scale FC analysis using Power 264 atlas were utilized to analyze the changes of brain spontaneous activity. …”
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572
Apoptosis antagonizing transcription factor expression and its validation as a potential diagnostic and prognostic biomarker in oral squamous cell carcinoma
Published 2025-01-01“…This study aimed to investigate the expression of apoptosis antagonizing transcription factor (AATF) in OSCC, examine its correlation with clinicopathological features, assess its prognostic implications, and explore its potential role in OSCC progression.MethodsExpression profiles and clinical data of OSCC patients were obtained from The Cancer Genome Atlas (TCGA). Immunohistochemical analysis on tissue microarrays was performed to assess AATF expression in OSCC. …”
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573
Conceptualización y Práctica de la Comunicación Responsable Universitaria: la perspectiva de los DirCOM sobre su ejercicio
Published 2022-10-01“…Las categorías y códigos de análisis se definieron a priori mediante una sistematización deductiva aplicada al software Atlas.Ti (v.8). Resultados: Los expertos muestran concordancia respecto a la definición de la Comunicación Responsable y plantean la necesidad de contemplar sus rasgos como parte de la Comunicación Pública que ejercen en la dinámica universitaria. …”
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574
Single-cell sequencing provides clues about the developmental genetic basis of evolutionary adaptations in syngnathid fishes
Published 2025-02-01“…We created a single-cell RNA sequencing atlas of Gulf pipefish embryos to understand the developmental basis of four traits: derived head shape, toothlessness, dermal armor, and male pregnancy. …”
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575
Efeito da burocracia no custo de transação econômica na Pró-Reitoria de Administração da Universidade Federal Rural do Semi-Árido
Published 2020-05-01“…Os dados foram tratados, atendendo aos preceitos da análise de conteúdo; para isso, primeiramente, transcreveu-se a entrevista, que posteriormente foi importada para o Software Atlas ti 8.0. Logo após, fez-se o trabalho de codificação que, com a finalização, empregou-se a categorização dos dados, com o propósito de criar famílias de acordo com as dimensões estudadas. …”
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576
Training and onboarding initiatives in high energy physics experiments
Published 2025-02-01“…In this article we document the current analysis software training and onboarding activities in several High Energy Physics (HEP) experiments: ATLAS, CMS, LHCb, Belle II and DUNE. Fast and efficient onboarding of new collaboration members is increasingly important for HEP experiments. …”
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577
Intersection of rare pathogenic variants from TCGA in the All of Us Research Program v6
Published 2025-04-01“…Summary: Using rare cancer predisposition alleles derived from The Cancer Genome Atlas (TCGA) and high cancer prevalence (14% of participants) in All of Us (version 6), we assessed the impact of these rare alleles on cancer occurrence in six broad groups of genetic similarity provided by All of Us: African/African American (AFR), Admixed American/Latino (AMR), East Asian (EAS), European (EUR), Middle Eastern (MID), or South Asian (SAS). …”
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578
Novel protein-based prognostic signature linked to immunotherapeutic efficiency in ovarian cancer
Published 2024-09-01“…Methods The workflow was demonstrated based on the Reverse Phase Protein Array (RPPA) and RNA-sequencing profiles of ovarian cancer patients from The Cancer Genome Atlas (TCGA). The algorithm began by clustering patients using immune-related gene sets, which allowed us to identify immune-related proteins of interest. …”
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579
Immune gene features and prognosis in colorectal cancer: insights from ssGSEA typing
Published 2025-02-01“…Methods We obtained and merged RNA-Seq data along with clinical details for colorectal cancer (CRC) from The Cancer Genome Atlas (TCGA) repository, and then performed immunocluster typing on all CRC specimens. …”
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580
Single-cell RNA-seq analysis reveals microenvironmental infiltration of myeloid cells and pancreatic prognostic markers in PDAC
Published 2025-01-01“…Methods Single-cell RNA sequencing (scRNA-seq) data were downloaded from t the Tumor Immune Single-cell Hub and gene expression data were retrieved from The Cancer Genome Atlas (TCGA) database and the Gene Expression Omnibus (GEO) database. …”
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