Exploration of the Long Noncoding RNAs Involved in the Crosstalk between M2 Macrophages and Tumor Metabolism in Lung Cancer by Fang Fang, Yuanshan Yao, Zhe Ma

“…Methods. The Cancer Genome Atlas was responsible for the public data. R software was responsible for the analysis of public data. …”
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Solid Predominant Histology and High Podoplanin Expression in Cancer-Associated Fibroblast Predict Primary Resistance to Osimertinib in EGFR-Mutated Lung Adenocarcinoma by Yuji Uehara, MD, Hiroki Izumi, MD, PhD, Tetsuro Taki, MD, PhD, Tetsuya Sakai, MD, PhD, Hibiki Udagawa, MD, PhD, Eri Sugiyama, MD, PhD, Shigeki Umemura, MD, PhD, Yoshitaka Zenke, MD, PhD, Shingo Matsumoto, MD, PhD, Kiyotaka Yoh, MD, PhD, Shoko Kubota, MD, PhD, Keiju Aokage, MD, PhD, Naoya Sakamoto, MD, PhD, Shingo Sakashita, MD, PhD, Motohiro Kojima, MD, PhD, Michiko Nagamine, MD, PhD, Yukio Hosomi, MD, PhD, Masahiro Tsuboi, MD, PhD, Koichi Goto, MD, PhD, Genichiro Ishii, MD, PhD

“…We also investigated HGF mRNA expression levels, using The Cancer Genome Atlas Program and Singapore Oncology Data Portal cohorts. …”
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HIV self-testing positivity rate and linkage to confirmatory testing and care: a telephone survey in Côte d’Ivoire, Mali, and Senegal by Kra, Arsène Kouassi, Fotso, Arlette Simo, Rouveau, Nicolas, Maheu-Giroux, Mathieu, Boily, Marie-Claude, Silhol, Romain, d’Elbée, Marc, Vautier, Anthony, Larmarange, Joseph

“…From 2019 to 2022, the ATLAS program distributed ∼ 400 000 HIVST kits in Côte d’Ivoire, Mali, and Senegal. …”
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Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation by Rebecca E. Graham, Runshi Zheng, Jesko Wagner, Asier Unciti-Broceta, David C. Hay, Stuart J. Forbes, Victoria L. Gadd, Neil O. Carragher

“…We have applied this morphological trajectory inference to the bi-potent HepaRG liver progenitor cell line allowing us to track liver cell fate and map small-molecule-induced changes using a morphological atlas of liver cell differentiation. Our overarching goal is to demonstrate the potential of Cell Painting to study biological processes as continuous trajectories at the single-cell level, enhancing resolution and biological understanding. …”
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ENTPD8 overexpression enhances anti-PD-L1 therapy in hepatocellular carcinoma via miR-214-5p inhibition by Si-qi Zhao, Min-jie Chen, Fei Chen, Zhao-feng Gao, Xiao-ping Li, Ling-yu Hu, Hai-ying Cheng, Jin-yan Xuan, Jian-guo Fei, Zheng-wei Song

“…Immunohistochemistry, The Cancer Genome Atlas (TCGA) data, and single-cell expression analysis revealed reduced ENTPD8 levels in liver cancer compared to adjacent tissues, with ENTPD8 primarily expressed in tumor cells within the tumor tissue. …”
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Immunoinfiltration Analysis of Mitochondrial Damage‐Related Genes in Lung Adenocarcinoma and Construction of a Classification and Prognostic Model Integrated With WGCNA and Machine... by Jirong Zhang, Lin Lin

“…Materials & Methods Using GeneCards and The Cancer Genome Atlas (TCGA) databases, we screened differentially expressed mitochondrial damage‐related genes in LUAD. …”
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Pharmacy Students’ Views on Pilot Interprofessional Learning at a Teaching Hospital in Pahang, Malaysia by Nor Hidayah Mohd Taufek, Norny Syafinaz Ab Rahman, Tengku Karmila Tengku Mohd Kamil, Mohamad Haniki Nik Mohamed, Nur Amni ‘Afifah Mohd Faisal, Christopher John Turner

“…Data were extracted, analysed sorted, and coded using Atlas.ti® version 9 and subjected to thematic analysis. …”
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Violencia simbólica y diversidad de género en tres universidades privadas de Puebla, México: discurso, negación e invisibilidad by Gonzalo A. García Cabrera, Ernesto Treviño Ronzón

“…El estudio se desarrolló siguiendo un enfoque cualitativo, tanto inductivo como deductivo, con grupos de enfoque mixtos, como principal herramienta de investigación, cuyas transcripciones fueron analizadas empleando Atlas.Ti desde una perspectiva crítico-discursiva, usando conceptos como discurso, género, violencia e identificación, adecuados el campo de la investigación en instituciones de educación superior. …”
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Differentiation between multiple sclerosis and neuromyelitis optic spectrum disorders with multilevel fMRI features: A machine learning analysis by Xiao Liang, Qingwen Zeng, Yanyan Zhu, Yao Wang, Ting He, Lin Wu, Muhua Huang, Fuqing Zhou

“…In this study, multilevel functional metrics including resting state functional connectivity, amplitude of low frequency fluctuation (ALFF), and regional homogeneity (ReHo) were calculated and extracted from 116 regions of interest in the anatomical automatic labeling atlas. Subsequently, classifiers were developed using different combinations of these selected features to distinguish between MS and NMOSD. …”
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Current practices and key challenges associated with the adoption of resilient, circular, and sustainable food supply chain for smallholder farmers to mitigate food loss by Jessika Milagros Vásquez Neyra, Jessika Milagros Vásquez Neyra, Mirza Marvel Cequea, Valentina Gomes Haensel Schmitt

“…Data were analyzed using content analysis techniques supported by ATLAS.ti 23 software to identify patterns in practices and challenges.ResultsThe findings reveal that farmers operate within short supply chains, without intermediaries, applying intuitive practices aligned with circular economy principles, including Rethink, Redesign, Reduce, Replace, Reuse, Repurpose, and Recycle, but excluding Recovery. …”
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Pregnancy, childbirth, and breastfeeding experience of women with epilepsy in Me’enit community, South West Ethiopia by Rahel Yaekob, Tefera Belachew

“…The data were analyzed by using ATLAS. ti 7.1.4. software and organized into thematic categories. …”
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REPRESENTACIONES MENTALES Y SOCIALES EN LA EQUIDAD DE GÉNERO by Ana María Winfield Reyes, Yasmín Ivette Jiménez Galán, Carlos Topete Barrera

“…Se usó la herramienta metodológica del Atlas.ti para generar un mapa conceptual interpretativo acerca de las representaciones mentales de la equidad de género y esto permitió el andamiaje de propuestas de acción a partir de la comprensión de dichas representaciones.…”
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Sulfatase modifying factor 2 as a predictive biomarker for urothelial carcinoma by Wei-Ting Kuo, Yi-Chen Lee, Jia-Bin Liao, Ching-Jiunn Tseng, Yi-Fang Yang

“…High SUMF2 mRNA levels were associated with poor overall survival (OS) and disease-free survival (DFS) in bladder UC (BLCA) from The Cancer Genome Atlas (TCGA) dataset. High SUMF2 protein levels were associated with grade (P < 0.001), T status (P = 0.01), and stage (P = 0.006) in patients with BLCA. …”
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Development of a Novel Prognostic Model for Lung Adenocarcinoma Utilizing Pyroptosis-Associated LncRNAs by Hong-Yan Bai, Tian-Tian Li, Li-Na Sun, Jing-Hong Zhang, Xiu-He Kang, Yi-Qing Qu

“…This study used genotype-tissue expression (GTEx) and the cancer genome atlas (TCGA) databases to obtain 477 lung adenocarcinoma (LUAD) and 347 healthy individuals’ samples as research subjects and divided LUAD patients into low-risk and high-risk groups based on prognostic risk scores. …”
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Lo común en los movimientos magisteriales: Entre emociones, disputas y educación by Ilse Ekatherine Argüelles Nakase

“…En segunda instancia, se despliega un análisis en dos categorías: 1) bienes comunes en escenarios magisteriales: trabajo y sindicalismo y 2) emociones y afectos comunes: miedo y rabia, construidas a través del uso del software ATLAS.ti.Finalmente el artículo cierra con unas breves reflexiones a manera de conclusiones temporales.…”
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Social support perception in parents of children with type 1 diabetes mellitus by Natalia Macarena Maureira MIranda, Claudia Maribel Muñoz Pavez, Maria Cecilia Toffoletto Toffoletto, Ángel Roco Videla

“…The analysis of the interviews was carried out using the ATLAS.ti version 22 program.<br /><strong>Results:</strong> the beginning of the children's illness was received by parents with much confusion and lack of knowledge. …”
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Autophagy-related long non-coding RNA MIR210HG plays a therapeutic role in hepatocellular carcinoma by Chaoqun Zhang, Dianxing Sun, Huifang Zhou, Chao Liu, Jie Ruan, Jiwen Kang, Ying Xie

“…Methods LncRNA MIR210HG expression and its correlation with survival outcomes in hepatocellular carcinoma patients were analyzed using data from The Cancer Genome Atlas (TCGA). Kaplan–Meier and Cox regression analyses were conducted to assess survival correlations. …”
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Urban risk mapping for geological faults in urban areas, prevention, and analysis with Geographic Information Systems, Mexico City, Mexico by Oscar Daniel Rivera-González, Mary Frances Teresa Rodriguez Van Gort

“…El objetivo del presente análisis se centra en cartografiar por medio de métodos geomáticos las principales fallas geológicas con base en fotointerpretación y obtención de datos vectoriales del Instituto Nacional de Estadística y Geografía (INEGI) de las zonas urbanas actuales y del Atlas Nacional de Riesgos, con el objetivo de contrastar dicha información y evidenciar las problemáticas existentes. …”
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Identified VCAM1 as prognostic gene in gastric cancer by co-expression network analysis by Wenjuan Li, Hong Gao, Jianjun Liu

“…Data from RNA sequencing and clinical pathological details were acquired from The Cancer Genome Atlas (TCGA) database and the Gene Expression Omnibus (GEO) dataset. …”
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Identification of a Robust Five-Gene Risk Model in Prostate Cancer: A Robust Likelihood-Based Survival Analysis by Yutao Wang, Jiaxing Lin, Kexin Yan, Jianfeng Wang

“…We considered 723 samples obtained from TCGA (the Cancer Genome Atlas), GSE46602, and GSE21032. Prostate cancer prognosis-related genes with P<0.05 were selected using Univariable Cox regression analysis. …”
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