Accurate human genome analysis with element avidity sequencing by Andrew Carroll, Alexey Kolesnikov, Daniel E. Cook, Lucas Brambrink, Kelly N. Wiseman, Sophie M. Billings, Semyon Kruglyak, Bryan R. Lajoie, Junhua Zhao, Shawn E. Levy, Cory Y. McLean, Kishwar Shafin, Maria Nattestad, Pi-Chuan Chang

Subjects: Get full text

Pangenome graph mitigates heterozygosity overestimation from mapping bias: a case study in Chinese indigenous pigs by Jian Miao, Qingyu Wang, Zhe Zhang, Qishan Wang, Yuchun Pan, Zhen Wang

Subjects: Get full text

Distinct chromosomal mutation associated with cefiderocol resistance in Acinetobacter baumannii: a combined bioinformatics and mass spectrometry approach to unveil and validate the... by Lavinia Morosi, Davide Golzato, Linda Bussini, Linda Bussini, Hygerda Guma, Federica Tordato, Federica Armanini, Zian Asif, Zian Asif, Francesco Carella, Francesco Carella, Paola Morelli, Michele Bartoletti, Michele Bartoletti, Giorgio Da Rin, Erminia Casari, Giuseppe Martano, Giuseppe Martano, Maria Rescigno, Maria Rescigno, Nicola Segata, Sara Carloni, Sara Carloni, Valeria Cento, Valeria Cento

Subjects: Get full text

SV-MeCa: an XGBoost-based meta-caller approach for structural variant calling from short-read data by Rudel Christian Nkouamedjo Fankep, Arda Söylev, Anna-Lena Kobiela, Jochen Blom, Corinna Ernst, Susanne Motameny

Subjects: Get full text

Benchmarking of variant calling software for whole-exome sequencing using gold standard datasets by Matthew Wong, Bryan Liew, Melissa Hum, Ning Yuan Lee, Ann S. G. Lee

Subjects: Get full text

Artificial intelligence in variant calling: a review by Omar Abdelwahab, Omar Abdelwahab, Omar Abdelwahab, Omar Abdelwahab, Davoud Torkamaneh, Davoud Torkamaneh, Davoud Torkamaneh, Davoud Torkamaneh

Subjects: “…variant calling…”
Get full text

Genome-Wide Identification and Characterization of SNPs and InDels of <i>Capsicum annuum</i> var. <i>glabriusculum</i> from Mexico Based on Whole Genome Sequencing by Valeria Itzel Moreno-Contreras, Ma. Carmen E. Delgado-Gardea, Jesús A. Ramos-Hernández, Alfonso Mendez-Tenorio, Hugo Varela-Rodríguez, Blanca Sánchez-Ramírez, Zilia Y. Muñoz-Ramírez, Rocío Infante-Ramírez

Subjects: Get full text

RnaXtract, a tool for extracting gene expression, variants, and cell-type composition from bulk RNA sequencing by Sophiane G. Bouirdene, Simon Gotty, Mickaël Leclercq, Charles Joly-Beauparlant, Emeric Texeraud, Steve Bilodeau, Arnaud Droit

Subjects: Get full text

Fast and accurate short-read alignment with hybrid hash-tree data structure by Junichiro Makino, Toshikazu Ebisuzaki, Ryutaro Himeno, Yoshihide Hayashizaki

Subjects: Get full text

Accurate and rapid single nucleotide variation detection in PCSK9 gene using nanopore sequencing by Ilaria Massaiu, Vincenza Valerio, Valentina Rusconi, Valentina Rusconi, Francesca Bertolini, Donato De Giorgi, Veronika A. Myasoedova, Paolo Poggio, Paolo Poggio

Subjects: Get full text

Precise detection of differential RNA editing sites across varied biological conditions using the CADRES pipeline by Jun Sun, Chi Zhang, Xiuling Li

Subjects: Get full text

A scalable distributed pipeline for reference-free variants calling by Lorenzo Di Rocco, Umberto Ferraro Petrillo

Subjects: Get full text

Efficient and easy gene expression and genetic variation data analysis and visualization using exvar by Hiba Ben Aribi, Imraan Dixon, Najla Abassi, Olaitan I. Awe

Subjects: Get full text

Identification of Toxoplasma gondii antigenic proteins using an in vivo approach and in silico investigation of their polymorphism by J. Denis, C. Gommenginger, L. Beal, B. Cimon, A. S. Deleplancque, H. Fricker Hidalgo, C. L'Ollivier, L. Paris, H. Pelloux, C. Pomares, S. Houze, A. W. Pfaff, I. Villena, O. Villard

Subjects: Get full text