Particular sequence characteristics induce bias in the detection of polymorphic transposable element insertions by Verneret, Marie, Le, Van Anthony, Faraut, Thomas, Turpin, Jocelyn, Lerat, Emmanuelle

Subjects: “…transposable element polymorphism, simulation, benchmark…”
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Impact of a horizontally transferred Helitron family on genome evolution in Xenopus laevis by Zhen Li, Nicolas Pollet

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Multi-tissue transcriptomic characterization of endogenous retrovirus-derived transcripts in Capra hircus by Ming-Di Li, Ming-Di Li, Hu-Rong Li, Shao-Hui Ye

Subjects: “…transposable element…”
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Plant diversity and transcriptional variability assessed by retrotransposon-based molecular markers by R. N. Kalendar, K. S. Aizharkyn, O. N. Khapilina, A. A. Amenov, D. S. Tagimanova

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Regulation of transcriptional homeostasis by DNA methylation upon genome duplication in pak choi by Min Ma, Yuanda Wang, Zhenfei Sun, Ranze Zhao, Honghua Li, Xiaoxuan Li, Hongfang Zhu, Xuedong Yang, Changwei Zhang, Yuda Fang

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High genetic variation and recombination events in the vicinity of non-autonomous transposable elements from ‘Candidatus Liberibacter asiaticus’ by Xue-feng WANG, Jiao-yue CHEN, Jin TAN, Suo DUAN, Xiao-ling DENG, Jian-chi CHEN, Chang-yong ZHOU

Subjects: “…miniature inverted-repeat transposable element…”
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Uncovering the breeding contribution of transposable elements from landraces to improved varieties through pan-genome-wide analysis in rice by Xiaoxia Li, Xiaoxia Li, Xiaofan Dai, Xiaofan Dai, Huiying He, Wu Chen, Qian Qian, Qian Qian, Lianguang Shang, Lianguang Shang, Longbiao Guo, Wenchuang He

Subjects: “…transposable element…”
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Rewiring of SINE-MIR enhancer topology and Esrrb modulation in expanded and naive pluripotency by Nadia Omega Cipta, Yingying Zeng, Ka Wai Wong, Zi Hao Zheng, Yao Yi, Tushar Warrier, Jian Zhou Teo, Jia Hao Jackie Teo, Yee Jiun Kok, Xuezhi Bi, Reshma Taneja, Derrick Sek Tong Ong, Jian Xu, Florent Ginhoux, Hu Li, Yih-Cherng Liou, Yuin-Han Loh

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Giant transposons promote strain heterogeneity in a major fungal pathogen by Emile Gluck-Thaler, Adrian Forsythe, Charles Puerner, Cecilia Gutierrez-Perez, Jason E. Stajich, Daniel Croll, Robert A. Cramer, Aaron A. Vogan

Subjects: “…transposable element…”
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Time-course transcriptome analysis reveals gene co-expression networks and transposable element responses to cold stress in cotton by Yan Dai, Jialiang Zhou, Baohong Zhang, Dewei Zheng, Kai Wang, Jinlei Han

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Widespread impact of transposable elements on the evolution of post-transcriptional regulation in the cotton genus Gossypium by Xuehan Tian, Ruipeng Wang, Zhenping Liu, Sifan Lu, Xinyuan Chen, Zeyu Zhang, Fang Liu, Hongbin Li, Xianlong Zhang, Maojun Wang

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Intron turnover of slc26a1 and slc26a2 and convergence of intron insertion sites by Kota Torii, Chihiro Ota, Ayumi Nagashima, Masaki Kajikawa, Akira Kato

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Structural features of somatic and germline retrotransposition events in humans by Päivi Nummi, Tatiana Cajuso, Tuukka Norri, Aurora Taira, Heli Kuisma, Niko Välimäki, Anna Lepistö, Laura Renkonen-Sinisalo, Selja Koskensalo, Toni T. Seppälä, Ari Ristimäki, Kyösti Tahkola, Anne Mattila, Jan Böhm, Jukka-Pekka Mecklin, Emma Siili, Annukka Pasanen, Oskari Heikinheimo, Ralf Bützow, Auli Karhu, Kathleen H. Burns, Kimmo Palin, Lauri A. Aaltonen

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Genome-wide comparative analysis of clinical and environmental strains of the opportunistic pathogen Paracoccus yeei (Alphaproteobacteria) by Magdalena Szuplewska, Dorota Sentkowska, Robert Lasek, Przemysław Decewicz, Mateusz Hałucha, Łukasz Funk, Cora Chmielowska, Dariusz Bartosik

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Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti by Alexander Bergman, Anna B. Crist, Hélène Lopez-Maestre, Hervé Blanc, Mauro Castelló-Sanjuán, Lionel Frangeul, Hugo Varet, Josquin Daron, Sarah H. Merkling, Maria-Carla Saleh, Louis Lambrechts

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Transposable Elements Contribute to the Regulation of Long Noncoding RNAs in <i>Drosophila melanogaster</i> by Yuli Gan, Lingyan Wang, Guoxian Liu, Xiruo Guo, Yiming Zhou, Kexin Chang, Zhonghui Zhang, Fang Yan, Qi Liu, Bing Chen

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Double-stranded DNA viruses may serve as vectors for horizontal transfer of intron-generating transposons by Landen Gozashti, Russell Corbett-Detig

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Drought-induced transposon expression reveals complex drought response mechanisms in Brassica napus by Manyi Chen, Dan Luo, Hanzhao Kong, Yan Lv, Chunsheng Li, Yongguo Zhao, Qian Huang, Guangyuan Lu, Guangyuan Lu

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The Dynamics of Long Terminal Repeat Retrotransposon Proliferation and Decay Drive the Evolution of Genome Size Variation in Capsicum by Qian Liu, Pinbo Liu, Shenghui Wang, Jian Yang, Liangying Dai, Jingyuan Zheng, Yunsheng Wang

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Identification of cell-type-specific, transcriptionally active transposable elements using long-read RNA-sequencing data-based comprehensive annotation by Chaemin Lim, Hyunsu An, Jihwan Park

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