Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of flavonoid biosynthesis in Polygonatum. by Xiaolin Wan, Qiang Xiao

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Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of amino acids and their derivatives biosynthesis in Polygonatum. by Xiuzhi Wang, Lingjun Cui, Qiang Xiao

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Full-length transcriptome provides insights into the molecular regulation of seed spike number in Agropyron mongolicum by Meiying Guo, Yaqin Wei, Xiqiang Liu, Xintian Huang, Yaling Liu, Yan Zhao

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The transcriptomic basis of oviposition behaviour in the parasitoid wasp Nasonia vitripennis. by Bart A Pannebakker, Urmi Trivedi, Mark L Blaxter, Rebekah Watt, David M Shuker

“…Oviposition in Nasonia therefore clearly modifies the transcriptome, providing a starting point for the genetic dissection of oviposition.…”
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Worm Perturb-Seq: massively parallel whole-animal RNAi and RNA-seq by Hefei Zhang, Xuhang Li, Dongyuan Song, Onur Yukselen, Shivani Nanda, Alper Kucukural, Jingyi Jessica Li, Manuel Garber, Albertha J. M. Walhout

“…Abstract Transcriptomes provide highly informative molecular phenotypes that, combined with gene perturbation, can connect genotype to phenotype. …”
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Characterization of T cells in the progression of dry eye disease using single-cell RNA sequencing in mice by Zhizhi Zhang, Liwei Zhang, Baihua Chen

“…Single-cell transcriptomics provided insights into 15 distinct subsets of T cells with heterogeneous functional states. …”
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Developing risk stratification strategies and biomarkers for recurrent hepatocellular carcinoma by Jia‐Hao Law, Huilin Shao, Ramanuj DasGupta, Daniel Q. Huang

“…Advanced technologies such as single‐cell and spatial transcriptomics provide unprecedented insights into fibrosis progression and tumor evolution. …”
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Global Transcriptome Analysis Reveals Distinct Aluminum-Tolerance Pathways in the Al-Accumulating Species Hydrangea macrophylla and Marker Identification. by Haixia Chen, Changping Lu, Hui Jiang, Jinhui Peng

“…The assembly of hydrangea transcriptome provides a rich source for gene identification and mining molecular markers, including single nucleotide polymorphism (SNP) and simple sequence repeat (SSR). …”
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RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation. by Meleri Jones, Inga R Dry, Dan Frampton, Manuraj Singh, Ravinder K Kanda, Michael B Yee, Paul Kellam, Michael Hollinshead, Paul R Kinchington, Edel A O'Toole, Judith Breuer

“…At the same time, analysis of the viral transcriptome provided evidence that VZV gene expression was significantly increased following calcium treatment of keratinocytes. …”
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Nuclear RNA sequencing of the mouse erythroid cell transcriptome. by Jennifer A Mitchell, Ieuan Clay, David Umlauf, Chih-Yu Chen, Catherine A Moir, Christopher H Eskiw, Stefan Schoenfelder, Lyubomira Chakalova, Takashi Nagano, Peter Fraser

“…In conclusion, sequencing the nuclear transcriptome provides an opportunity to investigate the transcriptional landscape in a given cell type through quantification of unspliced primary transcripts and the identification of nuclear-retained long non-coding RNAs.…”
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Spatial transcriptomics in autoimmune rheumatic disease: potential clinical applications and perspectives by Atsuko Tsujii Miyamoto, Hiroshi Shimagami, Atsushi Kumanogoh, Masayuki Nishide

“…In the field of rheumatology, the complex and elusive pathophysiology of diseases such as rheumatoid arthritis, systemic lupus erythematosus, and Sjögren’s syndrome remains a challenge for personalized treatment. Spatial transcriptomics provides insights into how different cell populations interact within disease foci, such as the synovial tissue, kidneys, and salivary glands. …”
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Comparative Analysis of Floral Transcriptomes in <i>Gossypium hirsutum</i> (Malvaceae) by Alexander Nobles, Jonathan F. Wendel, Mi-Jeong Yoo

“…Organ-specific transcriptomes provide valuable insight into the genes involved in organ identity and developmental control. …”
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Joint cell segmentation and cell type annotation for spatial transcriptomics by Russell Littman, Zachary Hemminger, Robert Foreman, Douglas Arneson, Guanglin Zhang, Fernando Gómez‐Pinilla, Xia Yang, Roy Wollman

“…Abstract RNA hybridization‐based spatial transcriptomics provides unparalleled detection sensitivity. …”
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Genomic and transcriptomic analyses provide new insights into the complex impacts of bud mutation in peach by Guo Rui, Zhou Ping, Yan Shaobin, Jin Guang, Li Yong

“…Our results elucidated the complicated impacts of bud mutation on the genome and transcriptome provide new insights into, providing new insights into the molecular mechanism of somatic mutation in plants.…”
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Gene ontology defines pre-post- hatch energy dynamics in the complexus muscle of broiler chickens by Jonathan Dayan, Zehava Uni

“…(B) The hatching muscle has the capacity for de-novo creatine synthesis, as indicated by the expression of related genes (AGAT, GAMT). (C) Transcriptome provided insights into genes related to energy pathways under conditions of pre-hatch oxygen and post-hatch glucose limitations (oxidative phosphorylation: NDUF, MT-ND, SDH, UQCR, COX, MT-CO, ATP5, MT-ATP; glycolysis/gluconeogenesis: FBP,G6PC, PFKM; glycogen metabolism: PPP1, PYGL, GYG1). …”
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Distinct transcriptional profiles of Leptospira borgpetersenii serovar Hardjo strains JB197 and HB203 cultured at different temperatures. by Ellie J Putz, Sathesh K Sivasankaran, Luis G V Fernandes, Brian Brunelle, John D Lippolis, David P Alt, Darrell O Bayles, Richard L Hornsby, Jarlath E Nally

“…<h4>Conclusions/significance</h4>Investigation of the L. borgpetersenii JB197 and HB203 transcriptome provides unique insight into the mechanistic differences between acute and chronic disease. …”
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Regulatory role of CD177+ neutrophils in BMP signaling pathway and its implications for inflammatory bowel disease, sepsis, and intestinal tumors by Lin Yu, Haoyue Zhang, Ling Jia, Detian Lai, Lina Jia, Qingzhu Li, Enwei Guo, Feng Yang, Bingyu Zhang, Qiancheng Luo

“…Single-cell transcriptomics provided insights into the tumor microenvironment. …”
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Building digital histology models of transcriptional tumor programs with generative deep learning for pathology-based precision medicine by Hanna M. Hieromnimon, James Dolezal, Kristina Doytcheva, Frederick M. Howard, Sara Kochanny, Zhenyu Zhang, Robert L. Grossman, Kevin Tanager, Cindy Wang, Jakob Nikolas Kather, Evgeny Izumchenko, Nicole A. Cipriani, Elana J. Fertig, Alexander T. Pearson, Samantha J. Riesenfeld

“…Molecular assays, like transcriptomics, provide an information-rich view of the tumor that can be leveraged to inform therapeutic selection. …”
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Transcriptome analysis of Thevetia peruviana cell suspensions treated with methyl jasmonate reveals genes involved in phenolics, flavonoids and cardiac glycosides biosynthesis by Olmedo Cuaspud, Olmedo Cuaspud, Dary Mendoza, Gigliola Navarro, Gigliola Navarro, Juan Arias, Isabel Calle, Juliana Arcila-Galvis, Juliana Arcila-Galvis, Rafael Eduardo Arango Isaza

“…This de novo assembly of T. peruviana transcriptome provides a valuable resource for future research in functional genomics and metabolic engineering of bioactive SMs. …”
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