Spatial relationships and interactions of immune cell niches are linked to the pathologic response of muscle-invasive bladder cancer to neoadjuvant therapy by Wasilijiang Wahafu, Quan Zhou, Xihua Yang, Yongming Yang, Yuanyuan Zhao, Zhu Wang, Xiangpeng Kang, Xiongjun Ye, Nianzeng Xing

Subjects: Get full text

Molecular signatures of preeclampsia subtypes determined through integrated weighted gene co-expression network analysis and differential gene expression analysis of placental tran... by Luhao Han, Fabricio da Silva Costa, Fabricio da Silva Costa, Anthony Perkins, Anthony Perkins, Olivia Holland, Olivia Holland

Subjects: Get full text

Spatial transcriptome analysis of myenteric plexus and intestinal epithelium of colon in patients with Parkinson’s disease by Chaewon Shin, Karoliina Eliisa Ruhno, Jung Hwan Shin, Sanha Hwang, Jasper Roldan Go, Minji Kang, Hyun Je Kim, Ji Hwan Moon, Han-Joon Kim

Subjects: Get full text

Cold-Tolerance Candidate Gene Identification in Maize Germination Using BSA, Transcriptome and Metabolome Profiling by Cheng Wang, Nan Hao, Yueming Li, Nan Sun, Liwei Wang, Yusheng Ye

Subjects: Get full text

Dysfunction in mitochondrial electron transport chain drives the pathogenesis of pulmonary arterial hypertension: insights from a multi-omics investigation by Xin Zhang, Jieling Li, Minyi Fu, Xijie Geng, Junjie Hu, Ke-Jing Tang, Pan Chen, Jianyong Zou, Xiaoman Liu, Bo Zeng

Subjects: Get full text

RnaXtract, a tool for extracting gene expression, variants, and cell-type composition from bulk RNA sequencing by Sophiane G. Bouirdene, Simon Gotty, Mickaël Leclercq, Charles Joly-Beauparlant, Emeric Texeraud, Steve Bilodeau, Arnaud Droit

Subjects: Get full text

Transcriptome-Wide Identification of miRNAs and Their Targets During Riboflavin-Promoted Dormancy Release in <i>Lilium</i> ‘Siberia’ by Xiaoping Xu, Chenglong Yang, Yiping Zheng, Wenjie Guo, Zhongxiong Lai, Shaozhong Fang

Subjects: Get full text

stGRL: spatial domain identification, denoising, and imputation algorithm for spatial transcriptome data based on multi-task graph contrastive representation learning by Xin Lu, Murong Zhou, Bo Gao, Fang Wang, Shuilin Jin, Qiaoming Liu, Guohua Wang

Subjects: “…Spatial transcriptomics…”
Get full text

Enhancing TREM2 expression activates microglia and modestly mitigates tau pathology and neurodegeneration by Kai Chen, Fuyao Li, Shuwen Zhang, Yixing Chen, Tadafumi C. Ikezu, Zonghua Li, Yuka A. Martens, Wenhui Qiao, Axel Meneses, Yiyang Zhu, Gisela Xhafkollari, Guojun Bu, Na Zhao

Subjects: Get full text

Cryo‐X‐Ray Phase Contrast Imaging Enables Combined 3D Structural Quantification and Nucleic Acid Analysis of Myocardial Biopsies by Kan Yan Chloe Li, Petros Syrris, Anne Bonnin, Thomas A Treibel, Vishwanie Budhram‐Mahadeo, Hector Dejea, Andrew C Cook

Subjects: Get full text

mNSF: multi-sample non-negative spatial factorization by Yi Wang, Kyla Woyshner, Chaichontat Sriworarat, Genevieve Stein-O’Brien, Loyal A. Goff, Kasper D. Hansen

Subjects: “…Spatial transcriptomics…”
Get full text

Physiological and transcriptional analyses of Arabidopsis primary root growth in response to phosphate starvation under light and dark conditions by Zhen Wang, Mingzhe Xia, Rui Ma, Zai Zheng

Subjects: Get full text

TMC5 as a Marker of Tumor-Associated Telocytes in Hepatocellular Carcinoma by Ying Xu, Jing Yu

Subjects: Get full text

CRP deposition in human abdominal aortic aneurysm is associated with transcriptome alterations toward aneurysmal pathogenesis: insights from in situ spatial whole transcriptomic an... by Eun Na Kim, Hee Young Seok, Joon Seo Lim, Jiwon Koh, Jeong Mo Bae, Chong Jai Kim, Ga-Hyeon Ryu, You Jung Ok, Jae-Sung Choi, Chung-Hyun Cho, Se Jin Oh

Subjects: Get full text

Heme-induced lung injury in human precision cut lung slices: a new model for acute lung injury by Namrata Kewalramani, Carlos Machahua, Thomas Michael Marti, Cas Zandbergen, Savvina Chortarea, Jessica Beretta-Piccoli, Christophe von Garnier, Patrick Dorn, Kleanthis Fytianos, Manuela Funke-Chambour

Subjects: Get full text

Unveiling fatty acid subtypes: immunometabolic interplay and therapeutic opportunities in gastric cancer by Huahuan Liu, Xin Hu, Xin Hu, Xiangnan Zhang, Yanxin Yao, Liuxing Wu, Ye Tian, Hongji Dai, Kexin Chen, Ben Liu

Subjects: Get full text

Predicting cellular responses to complex perturbations in high‐throughput screens by Mohammad Lotfollahi, Anna Klimovskaia Susmelj, Carlo De Donno, Leon Hetzel, Yuge Ji, Ignacio L Ibarra, Sanjay R Srivatsan, Mohsen Naghipourfar, Riza M Daza, Beth Martin, Jay Shendure, Jose L McFaline‐Figueroa, Pierre Boyeau, F Alexander Wolf, Nafissa Yakubova, Stephan Günnemann, Cole Trapnell, David Lopez‐Paz, Fabian J Theis

Subjects: Get full text

STopover captures spatial colocalization and interaction in the tumor microenvironment using topological analysis in spatial transcriptomics data by Sungwoo Bae, Hyekyoung Lee, Kwon Joong Na, Dong Soo Lee, Hongyoon Choi, Young Tae Kim

Subjects: “…Spatially resolved transcriptomics…”
Get full text

Comparative transcriptome analysis reveals candidate gene for flowering time QTL HvHeading in barley by Nazanin P. Afsharyan, Jens Léon, Ali Ahmad Naz, Agim Ballvora

Subjects: Get full text

A Single-Cell Transcriptome Atlas of Epithelial Subpopulations in HPV-Positive and HPV-Negative Head and Neck Cancers by Mary C. Bedard, Cosette M. Rivera-Cruz, Tafadzwa Chihanga, Andrew VonHandorf, Alice L. Tang, Chad Zender, Matthew T. Weirauch, Robert Ferris, Trisha M. Wise-Draper, Mike Adam, Susanne I. Wells

Subjects: Get full text