Integrating pharmacogenomics and cheminformatics with diverse disease phenotypes for cell type-guided drug discovery by Arda Halu, Sarvesh Chelvanambi, Julius L. Decano, Joan T. Matamalas, Mary Whelan, Takaharu Asano, Namitra Kalicharran, Sasha A. Singh, Joseph Loscalzo, Masanori Aikawa

“…Results Cell type-specific gene-drug perturbation networks built using QUIZ-C are topologically distinct, reflecting the biological uniqueness of the cell lines in CMap, and are enriched in known drug targets. …”
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Fusion of EEG and EMG signals for detecting pre-movement intention of sitting and standing in healthy individuals and patients with spinal cord injury by Chenyang Li, Chenyang Li, Yuchen Xu, Tao Feng, Tao Feng, Minmin Wang, Minmin Wang, Minmin Wang, Xiaomei Zhang, Li Zhang, Li Zhang, Ruidong Cheng, Weihai Chen, Weihai Chen, Weidong Chen, Weidong Chen, Shaomin Zhang, Shaomin Zhang, Shaomin Zhang, Shaomin Zhang

“…Pairwise spatial filters were then designed to extract discriminative spatial network topologies. Each filter paired with a support vector machine classifier to classify future movements into one of three classes: sit-to-stand, stand-to-sit, or rest. …”
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Comparative analysis of chloroplast genomes reveals molecular evolution and phylogenetic relationships within the Papilionoideae of Fabaceae by Qian Qin, Yanjing Dong, Jialong Chen, Bo Wang, Yuxin Peng, XinPeng Zhang, Xiaoyun Wang, Jinxiang Zeng, Guoyue Zhong, Shouwen Zhang, Xiaolang Du

“…Moreover, by using D. elegans as a reference, six genes (ycf4, clpP, ycf1, trnI-GAU, accD, rpl32) displayed high nucleotide polymorphism (Pi > 0.1), and the Ka/Ks ratio for all protein-coding genes was determined to be less than 1. The topological structure of the constructed phylogenetic tree of 85 species was basically consistent with that of Pap.. …”
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Identification of a potential homeodomain-like gene governing leaf size and venation architecture in birch by Xiuyan Bian, Xiuyan Bian, Chen Chen, Chen Chen, Yang Wang, Yang Wang, Chang Qu, Chang Qu, Jing Jiang, Yao Sun, Guifeng Liu

“…To conclude, our findings contribute to a better understanding of HD-like superfamily genes and unravel the role of a potential HD-like gene in genetically controlling leaf size and venation patterning in birch, which provides clues to genetic improvement of woody plants with diverse geometric and topological properties of leaf vascular network.…”
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Kinematics Analysis and Performance Optimization of Low Coupling PRPaR/2CRR Parallel Mechanism by Zhang Li, Zhu Lei, Xu Dong

“…The mechanism is improved by adding support chains to the parallelogram mechanism in response to the performance shortcomings of the 3CRR parallel mechanism. Based on the topological structure synthesis method, a batch of spatial triple translational parallel mechanisms were synthesized, and a PRPaR/2CRR parallel mechanism with spatial triple translational motion was optimized. …”
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Technical note: Towards atmospheric compound identification in chemical ionization mass spectrometry with pesticide standards and machine learning by F. Bortolussi, H. Sandström, F. Partovi, F. Partovi, J. Mikkilä, P. Rinke, P. Rinke, P. Rinke, P. Rinke, M. Rissanen, M. Rissanen

“…We compared their performance on five different representations of the molecular structure: the topological fingerprint (TopFP), the molecular access system keys (MACCS), a custom descriptor based on standard molecular properties (RDKitPROP), the Coulomb matrix (CM) and the many-body tensor representation (MBTR). …”
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Identification of potential corticosteroid binding sites on the SARS CoV-2 main protease Mpro — in silico docking study by Н. В. Хміль, А. В. Шестопалова, В. Г. Колесніков, А. О. Боєчко-Немовча

“…Objectives: The aim of this study is to identify the potential corticosteroid binding sites on SARS CoV-2 main protease Mpro based on the analysis of the energetic and topological characteristics of the complexes as well as to investigate the inhibitory activity of selected corticosteroids against Mpro. …”
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