Comparative transcriptome analysis reveals a possible mechanism of starvation stress-induced fruit abscission in macadamia by Yu-Chong Fei, Yi Mo, Kai Lin, Liang Tao, Xiyong He, Faquan Ye, Jiajing Xu, Meng Li, Zeng-Fu Xu

“…Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway analyses revealed that the functions and pathways of these DEGs were related to hydrolases and transferases, carbohydrate metabolism, plant hormone synthesis, and signal transduction. …”
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Multi-loci phylogeny reveals unexpected novelty of the Thelephora palmata complex (Thelephoraceae, Thelephorales) from China by Tai-Jie Yu, Tai-Jie Yu, Rou Xue, Rou Xue, Rou Xue, Lin-Jie Su, Lin-Jie Su, Jia Li, Jia Li, Xing Xia, Xing Xia, Chang Xu, Chang Xu, Han-Chi Lei, Han-Chi Lei, Wen-Hao Zhang, Wen-Hao Zhang, Jing Ma, Jing Ma, Hong-Yan Huang, Xiu-Juan Li, Xiu-Juan Li, Yu-Xian Gao, Yu-Xian Gao, Zhi-Xiang Zhang, Li Li, Guo-Li Zhang, Guo-Li Zhang, Li-Ping Tang, Li-Ping Tang

“…However, comprehensive phylogenetic analysis based on four loci (ITS, nrLSU, rpb2, and nrSSU) revealed that T. palmata sensu lato represents a species complex consisting of at least 12 cryptic taxa, with a biogeographic distribution pattern bounded by geographic regions: Asia, Eurasia, Europe, and North America. …”
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The ensemble learning combined with the pruning model reveals the spectral response mechanism of tidal flat mapping in China by Jiapeng Dong, Kai Jia, Chongyang Wang, Guorong Yu, Dan Li, Shuisen Chen, Xingda Chen, Ni Wen, Zitong Zhao

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Comprehensive analysis reveals cholesterol metabolism-related signature for predicting prognosis and guiding individualized treatment of glioma by Dengfeng Lu, Fei Wang, Yayi Yang, Aojie Duan, Yubo Ren, Yun Feng, Haiying Teng, Zhouqing Chen, Xiaoou Sun, Zhong Wang

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Characterization of the landscape of the intratumoral microbiota reveals that Streptococcus anginosus increases the risk of gastric cancer initiation and progression by Li Yuan, Libin Pan, Yunzhe Wang, Jing Zhao, Luo Fang, Ying Zhou, Ruihong Xia, Yubo Ma, Zhengchen Jiang, Zhiyuan Xu, Can Hu, Yanan Wang, Shengjie Zhang, Bo Zhang, Haiying Ding, Mengxuan Chen, Haibo Cheng, Ajay Goel, Zhao Zhang, Xiangdong Cheng

“…The microbiome was used to categorize GC samples into six subtypes, and patients with a high abundance of Streptococcus or Pseudomonas had a markedly worse prognosis. Further assays revealed that Streptococcus anginosus (SA) promoted tumour cell proliferation and metastasis while suppressing the differentiation and infiltration of CD8+ T cells. …”
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Combined metabolism and transcriptome profiling reveals the novel role of abscisic acid during grape berry ripening by Qian Mu, Xiangpeng Leng, Peipei Wang, Lixia Cheng, Xinglong Ji, Jianqing Chen, Xudong Zhu

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Bidirectional two-sample Mendelian randomization reveals causal link between genetic blood metabolites and tuberculosis by Zhenyu Shi, Chenyi Zhao, Xiaowen Yu, Dingding Zhao, Yongqiang Li

“…This is the first time to reveal the causal effects of human metabolites on TB through MR, and the metabolites may be potential biomarkers candidate for TB diagnosis, and monitoring these metabolites might have great clinic significance for TB diagnosis and treatment in the future.…”
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RNA-seq analysis reveals transcriptome changes in livers from Efcab4b knockout mice by Chew W. Cheng, Lucia Pedicini, Cintli Morales Alcala, Fenia Deligianni, Jessica Smith, Ryan D. Murray, Harriet J. Todd, Niamh Forde, Lynn McKeown

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Pangenome analysis reveals yield- and fiber-related diversity and interspecific gene flow in Gossypium barbadense L. by Qingying Meng, Peihao Xie, Zhongping Xu, Jiwei Tang, Liuyang Hui, Jiaqi Gu, Xinxin Gu, Shihe Jiang, Yuxuan Rong, Jie Zhang, Joshua A. Udall, Corrinne E. Grover, Kai Zheng, Quanjia Chen, Jie Kong, Maojun Wang, Xinhui Nie, Zhongxu Lin, Shuangxia Jin, Jonathan F. Wendel, Xianlong Zhang, Daojun Yuan

“…Furthermore, we detect the underlying candidate genes and uncover the origin and distribution of favorable alleles, and reveal the tradeoff between lint percentage and fiber quality. …”
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Cross-sectional Study Reveals Moderate Professional Benefits Among Nurses in a Multicultural Healthcare System by Ka Ieng Lai MSc, Pedro Fong PhD, Lirong Meng PhD

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Multi-omics reveal the neuroprotective mechanisms of Xinshubao tablet against scopolamine-induced cognitive dysfunction in mice by Zhe Yang, Zhe Yang, Feng-Rong Zhang, Lu Ren, Jia-Ming Bai, Shi-Cong Wang, Xian-Yu Li, Hong-Jun Yang, Hong-He Xiao

“…Then, fecal 16S rDNA sequencing, serum metabolomics, and hippocampal mRNA sequencing (mRNA-seq) analysis were performed to investigate the underlying mechanisms.Results and discussionThe results revealed that oral administration of XSB improved cognitive function, mitigated neuropathological damage, and alleviated dysfunction in the cholinergic system in AD-like mice. …”
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Network toxicology and bioinformatics analysis reveal the molecular mechanisms of polyethylene terephthalate microplastics in exacerbating diabetic nephropathy by Shengnan Zeng, Hui Guo

“…These genes were enriched in pathways like VEGF signaling, PI3K activity, and oxidative stress responses. GSVA revealed significant dysregulation in 2,258 pathways, including inflammation, immune response, and ROS metabolism. …”
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Comprehensive Integrated Analysis Reveals the Spatiotemporal Microevolution of Cancer Cells in Patients with Bone-Metastatic Prostate Cancer by Yinghua Feng, Xiuli Zhang, Guangpeng Wang, Feiya Yang, Ruifang Li, Lu Yin, Dong Chen, Wenkuan Wang, Mingshuai Wang, Zhiyuan Hu, Yuan Sh, Nianzeng Xing

“…By integrating genetic and metabolic features, we revealed key evolutionary trajectories of epithelial cancer cells during metastasis. …”
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Long-range effect in condensed matter and its revealing in implanted with high energy light ions silicon by A. A. Groza, P. G. Litovchenko, M. I. Starchik, V. I. Khivrych, G. G. Shmatko, V. I. Varnina

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An Association Rule Mining-Based Method for Revealing the Impact of Operational Sequence on Nuclear Power Plants Operating by Yuxuan He, Jian Song, Shaoke Shi, Haibo Lian, Jiangyang He, Ren Yu, Tete Liu, Bin Sun, Jiangtao Yuan, Yingbin Hu

“…Therefore, this paper proposes the use of association rule techniques to mine the NPP operating data to discover the operational characteristics of operators and reveal their possible impact on the NPP operation. …”
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Differential microRNA profiling of the Marshallese population in Arkansas reveals a higher association with chronic diseases by Gohar Azhar, Ambika Verma, Pankaj Patyal, Wei Zhang, Shakshi Sharma, Patricia E. Savary, Sheldon Riklon, Philmar Mendoza Kabua, Pearl A. McElfish, Jeanne Y. Wei

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Bioinformatics analysis reveals shared molecular pathways for relationship between ulcerative colitis and primary sclerosing cholangitis by Pooya Jalali, Malihe Rezaee, Alireza Yaghoobi, Moein Piroozkhah, Mohammad Reza Zabihi, Shahram Aliyari, Zahra Salehi

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Revealing the Next Word and Character in Arabic: An Effective Blend of Long Short-Term Memory Networks and ARABERT by Fawaz S. Al-Anzi, S. T. Bibin Shalini

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The Extraordinary Long-lasting Infrared Echo of PS16dtm Reveals an Extremely Energetic Nuclear Outburst by Ning Jiang, Di Luo, Jiazheng Zhu, Roc M. Cutri

“…PS16dtm is one of the earliest reported tidal disruption events (TDEs) in active galactic nuclei and displays a remarkably bright and long-lived infrared (IR) echo revealed by multiepoch photometry from the Wide-field Infrared Survey Explorer (WISE). …”
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An integrated proteo-transcriptomics approach reveals novel drug targets against multidrug resistant Escherichia coli by Manisha Aswal, Nirpendra Singh, Neelja Singhal, Manish Kumar

“…Bioinformatic analysis using GO-terms, COG and KEGG functional annotations revealed that the concordantly overexpressed genes of MDR E. coli were involved primarily in biosynthesis of secondary metabolites, aminoacyl-tRNAs and ribosomes. …”
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