Environmental DNA Haplotyping Reveals Dispersal Patterns of Invasive Bluegill Sunfish, Lepomis macrochirus, in Japan by Kei Wakimura, Ryuji Yonekura, Hiroki Yamanaka, Kimiko Uchii

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Acute manipulation of diacylglycerol reveals roles in nuclear envelope assembly & endoplasmic reticulum morphology. by Marie-Charlotte Domart, Tina M C Hobday, Christopher J Peddie, Gary H C Chung, Alan Wang, Karen Yeh, Nirmal Jethwa, Qifeng Zhang, Michael J O Wakelam, Rudiger Woscholski, Richard D Byrne, Lucy M Collinson, Dominic L Poccia, Banafshé Larijani

“…Acute and inducible DAG depletion results in failure of the nuclear envelope (NE) to reform at mitosis and reorganisation of the ER into multi-lamellar sheets as revealed by correlative light and electron microscopy and 3D reconstructions. …”
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The species distribution model based on the random forest algorithm reveals the distribution patterns of Neophocaena asiaeorientalis by Rao Rongcheng, Huang Yi, Min Jialing, Yang Ying, Liu Fanning, Wu Xiya, Shi Xinyuan, Li Caigang, Dai Yingen, Huang Qinghai, Yu Jinxiang, Que Jianglong

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Phosphorus Variations in Volcanic Sequences Reveal the Linkage Between Regional Tectonics and Terrestrial Biota Evolution by Chao Ma, Yanjie Tang, Stephen F. Foley, Chenyang Ye, Jifeng Ying, Xinmiao Zhao, Yan Xiao, Hongfu Zhang

“…Here, we show that the secular variation of P availability in the Mesozoic volcanic rocks were the immediate results of the changes in volcanic intensity and lithospheric thickness controlled by the geological background of the cratonic destruction resulting from the paleo‐Pacific plate subduction. This study reveals the constraint effect of regional tectonics on the evolution of terrestrial ecosystems through the volcanism and P cycle.…”
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Multidimensional analysis reveals gene expression, cell interactions, and signaling networks in glioma and Alzheimer’s disease by Meiyi Wang, Jie Yu, Dongfang Ge, Zhiwen Geng, Chengqun Wei, Dan Xu

“…Principal Component Analysis (PCA) and dimensionality reduction techniques like UMAP and t-SNE reveal cell population heterogeneity and potential subgroups. …”
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Temporal dynamics of the multi-omic response reveals the modulation of macrophage subsets post-myocardial infarction by Yuan Wu, Panting Wei, Bin Li, Jiaqi He, Ting Zhou, Qingbin Hou, Yunhao Yu, Jingjin Hou, Chenghui Yan, Yaling Han

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Spatial transcriptomics reveal high T cell and monocyte status as predictive and prognostic markers in pancreatic cancer by Yeon Bi Han, Sejoon Lee, Jin-Ok Lee, Se In Jeong, Ki Rim Lee, Soomin Ahn, Kwangrok Jung, Jong-Chan Lee, Yoo-Seok Yoon, Jin-Hyeok Hwang, Ho-Seong Han, Hee Young Na, Jaihwan Kim

“…Multivariate analysis revealed age, high monocyte infiltration, and high CD68-positive cell infiltration as independent prognostic factors for overall survival. …”
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Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits by Hui Wu, Ling-Yun Luo, Ya-Hui Zhang, Chong-Yan Zhang, Jia-Hui Huang, Dong-Xin Mo, Li-Ming Zhao, Zhi-Xin Wang, Yi-Chuan Wang, EEr He-Hua, Wen-Lin Bai, Di Han, Xing-Tang Dou, Yan-Ling Ren, Renqing Dingkao, Hai-Liang Chen, Yong Ye, Hai-Dong Du, Zhan-Qiang Zhao, Xi-Jun Wang, Shan-Gang Jia, Zhi-Hong Liu, Meng-Hua Li

“…Also, our analyses reveal a set of selective variants and genes associated with domestication (e.g., NKG2D and ABCC4) and cashmere traits (e.g., ABCC4 and ASIP).…”
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Combined systems approaches reveal highly plastic responses to antimicrobial peptide challenge in Escherichia coli. by Justyna Kozlowska, Louic S Vermeer, Geraint B Rogers, Nabila Rehnnuma, Sarah-Beth T A Amos, Garrit Koller, Michael McArthur, Kenneth D Bruce, A James Mason

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TCR and BCR repertoire analysis reveals distinct signatures between benign and malignant ovarian tumors by Zhonghuang Wang, Zhonghuang Wang, Zhe Zhang, Dongli Zhao, Dongli Zhao, Zhenglin Du, Bixia Tang, Enhui Jin, Hailong Kang, Wenming Zhao, Yuanguang Meng

“…Moreover, a comparison of the spatial distributions of TCR and BCR revealed, for the first time, that TCR was more significantly associated with the benign-to-malignant transformation of ovarian tumors.ConclusionsOur study highlights the critical role of the adaptive immune repertoire in distinguishing between benign and malignant ovarian tumors. …”
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Hierarchical Regulatory Networks Reveal Conserved Drivers of Plant Drought Response at the Cell‐Type Level by Moyang Liu, Yuanyuan Xu, Yue Song, Dongying Fan, Junpeng Li, Zhen Zhang, Lujia Wang, Juan He, Cheng Chen, Chao Ma

“…By analyzing nearly 30 000 multi‐omics data samples across species, unique insights are revealed into conserved drought responses and cell‐type‐specific regulatory dynamics, leveraging novel integrative analytical workflows. …”
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Optogenetics reveals Cdc42 local activation by scaffold-mediated positive feedback and Ras GTPase. by Iker Lamas, Laura Merlini, Aleksandar Vještica, Vincent Vincenzetti, Sophie G Martin

“…These cells further revealed that the small GTPase Ras1 plays a role in both localizing the GEF Scd1 and promoting its activity, which potentiates the positive feedback. …”
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Whole genome resequencing reveals the evolutionary history and geographic isolation of the eastern Asian Hickory (Carya) by Da Zhang, Rui‐Feng Yang, Jia‐Hui Chen, Lang‐Bo Pan, Wei Duan, Guo‐Hua Xia, Qi‐Xiang Zhang, You‐Jun Huang

“…Phylogenetic analysis of Carya revealed two distinct clades, separating EA Carya from NA (North America) Carya. …”
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Proteomic analysis reveals dynamic expression related to malondialdehyde in cassava in response to cassava bacterial blight by Chotiros Phaisomboon, Supajit Sraphet, Nattaya Srisawad, Piengtawan Tappiban, Sittiruk Roytrakul, Duncan R. Smith, Kanokporn Triwitayakorn

“…Understanding tolerant cultivar responses can reveal key disease resistance mechanisms. This study identified differentially abundant proteins between the tolerant ‘Rayong72’ (R72) and susceptible ‘Hanatee’ (HN) cassava cultivars, with quantitative PCR validating mRNA-level changes. …”
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Pan-Cancer Analysis Reveals PRIM2 as a Potential Biomarker for Diagnosis, Prognosis, and Immunomodulatory by Xi Zhang, Yuanyu Zhang, Leheng Liu, Zheng Gong, Kecheng Zhou

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Universal multilayer network embedding reveals a causal link between GABA neurotransmitter and cancer by Léo Pio-Lopez, Michael Levin

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Single-cell analysis of mature hepatocytes reveals an IRF1-driven restriction of HDV infection by Frauke Lange, Jonathan Garn, Matthias Bruhn, Thomas Pietschmann, Arnaud Carpentier

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Revealing Physical Mechanisms of Spatial Pattern Formation and Switching in Ecosystems via Nonequilibrium Landscape and Flux by Jie Su, Wei Wu, Denis D. Patterson, Simon Asher Levin, Jin Wang

“…The emergence of pattern switching is revealed through the optimal pathways and how fast this occurs via the speed of pattern switching. …”
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Metabolomics Profiling Reveals Critical Roles of Indoxyl Sulfate in the Regulation of Innate Monocytes in COVID-19 by Liqing He, Yunke Wang, Fang Yuan, Samantha Morrissey, Anne E. Geller, Xiaoling Hu, Raobo Xu, Xipeng Ma, Huang-ge Zhang, Kenneth McLeish, Jiapeng Huang, Xiang Zhang, Jun Yan

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Magmatic Carbon and Helium in Springs Reveals the Vitality of a Dormant Volcano, Taranaki, New Zealand by C. Werner, C. I. Schipper, S. J. Cronin, P. H. Barry, M. K. Stewart

“…Cold spring geochemistry thus reveals volcanic activity at this dormant volcano that otherwise lacks obvious geophysical signs of unrest.…”
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