MYC target gene activation in chronic lymphocytic leukemia and richter transformation: links to aggressiveness and tumor microenvironment interactions by M. Tsagiopoulou, S. Rashmi, M. Chatziaslani, M. Chatziaslani, M. Chatziaslani, I. Gut, I. Gut

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Mapping Cell Identity from scRNA-seq: A primer on computational methods by Daniele Traversa, Matteo Chiara

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Protocol for predicting suppressors of cell-death pathways based on transcriptomic and vulnerability data by Yaron Vinik, Avi Maimon, Sima Lev

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Profiling low-mRNA content cells in complex human tissues using BD Rhapsody single-cell analysis by Alexandra Scheiber, Manuel Trebo, Annabella Pittl, Isabel Heidegger, Theresa Hautz, Rupert Oberhuber, Zlatko Trajanoski, Florian Augustin, Sieghart Sopper, Dominik Wolf, Andreas Pircher, Stefan Salcher

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E3RC: A step-by-step computational protocol for exploring enhancer RNA expression and regulation using conventional RNA-seq data by Hua Yu, Yunjie Liu, Zhouming Zhang, Guanglei Xie, Jingyu Liu, Yijia Liu, Siyue He, Zhiwei Peng, Lu Lu, Fei Li, Xi Wang

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Synergistic Anti-Cancer Effects of Curcumin and Thymoquinone Against Melanoma by Hana Mohd, Bozena Michniak-Kohn

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The impact of dropouts in scRNAseq dense neighborhood analysis by Alisa Pavel, Manja Gersholm Grønberg, Line H. Clemmensen

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Ultrasmall epibiont Nanosynbacter lyticus strain TM7x and host bacteria transcriptional activity after initial host parasitism by Erik L Hendrickson, Batbileg Bor, Kristopher A. Kerns, Lujia Cen, Wenyuan Shi, Xuesong He, Jeffrey S McLean

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RNA Sequencing Dataset of <i>Drosophila</i> Nociceptor Translatomic Response to Injury by Christine M. Hale, Kyle J. Beauchemin, Courtney L. Brann, Julie K. Moulton, Ramaz Geguchadze, Benjamin J. Harrison, Geoffrey K. Ganter

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Effect of enhanced early life nutrition on the M. longissimus thoracis et lumborum transcriptome of crossbred beef heifer calves by Kate Keogh, Alan K. Kelly, David A. Kenny

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Targeting Cancer with Paris’ Arrow: An Updated Perspective on Targeting Wnt Receptor Frizzled 7 by Kieran Hodson, Hector M. Arredondo, William E. Humphrey, Dustin J. Flanagan, Elizabeth Vincan, Karl Willert, Helen B. Pearson, Toby J. Phesse

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Antennal RNAseq reveals odorant receptors with sex-biased expression in the common eastern firefly, Photinus pyralis by Sarah E. Lower, Samuel Pring, Hanh Tran, Katherine Martinson, Susan Deering, Mathew A. Price, Brian Vestal, Gregory M. Pask, Douglas B. Collins, Robert F. Mitchell

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Protocol to decipher complex spatial transcriptomics data using STMiner by Peisen Sun, Mingxuan Li, Kai Ye

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Exposure-inducible genes may contribute to missingness in RNAseq-based gene expression analyses by Olga Y. Gorlova, Ivan P. Gorlov, R. Taylor Ripley, Chao Cheng, Yafang Li, Bo Peng, Yanhong Liu, Hee-Jin Jang, Sung Wook Kang, Claire Lee, Priyanka Ranchod, Bryan M. Burt, Hyun-Sung Lee, Christopher I. Amos

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Epiplakin expression is lost in psoriatic skin lesions and is downregulated by IFN-γ in ex vivo skin cultures by Hannes Kühtreiber, Corinne Drexler, Corinne Drexler, Melanie Salek, Lisa Auer, Johannes Griss, Michael Mildner, Peter Fuchs, Peter Fuchs

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The effect of visfatin on the transcriptomic profile of porcine anterior pituitary cells during periimplantation period by Kamil Dobrzyn, Grzegorz Kopij, Marta Kiezun, Ewa Zaobidna, Marlena Gudelska, Barbara Zarzecka, Katarzyna Kisielewska, Agnieszka Rak, Nina Smolinska, Tadeusz Kaminski

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Integrating multi-omics and machine learning methods reveals the metabolism of amino acids and derivatives-related signature in colorectal cancer by Jian Yue, Jian Yue, Huiying Fang, Qian Yang, Qian Yang, Rui Feng, Guosheng Ren

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Field performance, alkaloid quantities, and transcriptome profiles of nearly isogenic tobacco lines possessing alternative allelic combinations at the Nic1, Nic2, and Myc2a loci by Rui Shi, Zachary Allen, Tyler Steede, Ramsey S. Lewis

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Single-cell analysis reveals significant transcriptomic alterations in preclinical Crohn’s disease by Dimitrios Kioroglou, Leire Egia-Mendikute, Asis Palazon, Asis Palazon, Manuel Barreiro-de Acosta, Iago Rodríguez-Lago, Iago Rodríguez-Lago, Urko M. Marigorta, Urko M. Marigorta

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Effect of enhanced early life nutrition on the molecular regulation of anterior pituitary function in Holstein Friesian bull calves by K. Keogh, S. Coen, P. Lonergan, S. Fair, D. A. Kenny

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