Method for assigning double-stranded RNA structures by Trevor S. Brown, Philip C. Bevilacqua

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Fitness landscape of a dynamic RNA structure. by Valerie W C Soo, Jacob B Swadling, Andre J Faure, Tobias Warnecke

“…RNA structures are dynamic. As a consequence, mutational effects can be hard to rationalize with reference to a single static native structure. …”
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The myriad roles of RNA structure in the flavivirus life cycle by Quinn H. Abram, Breanna N. Landry, Alex B. Wang, Ronja F. Kothe, Hannah C.H. Hauch, Selena M. Sagan

“…Herein, we highlight advances in our understanding of flavivirus RNA structural elements through the lens of their impact on the viral life cycle. …”
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Unveiling RNA structure-mediated regulations of RNA stability in wheat by Haidan Wu, Haopeng Yu, Yueying Zhang, Bibo Yang, Wenqing Sun, Lanying Ren, Yuchen Li, Qianqian Li, Bao Liu, Yiliang Ding, Huakun Zhang

“…Our findings indicate that the 3’ UTR structure and homoeolog preference for RNA structural motifs can influence mRNA stability, leading to subgenomic RNA decay imbalance. …”
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RNA structure in alternative splicing regulation: from mechanism to therapy by Bao Nengcheng, Wang Zhechao, Fu Jiayan, Dong Haiyang, Jin Yongfeng

“…Its regulation is multifactorial, with RNA structure exerting a significant impact. …”
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The role of RNA structural motifs in RNA-lipid raft interaction by Rafał Mańka, Karolina Sapoń, Joanna Zaziąbło, Teresa Janas, Aleksander Czogalla, Tadeusz Janas

“…Abstract Here, we sought to determine the role of specific RNA structural motifs in the interaction of RNA with model lipid vesicles containing liquid-ordered domains (RAFT liposomes). …”
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Advances in solid-state NMR methods for studying RNA structures and dynamics by Jinhan He, Xiaole Liu, Shenlin Wang

“…Ribonucleic acid (RNA) structures and dynamics play a crucial role in elucidating RNA functions and facilitating the design of drugs targeting RNA and RNA-protein complexes. …”
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Systematic benchmarking of deep-learning methods for tertiary RNA structure prediction. by Akash Bahai, Chee Keong Kwoh, Yuguang Mu, Yinghui Li

“…Experimental methods for determining RNA structures are labour-intensive, expensive, and time-consuming. …”
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REDalign: accurate RNA structural alignment using residual encoder-decoder network by Chun-Chi Chen, Yi-Ming Chan, Hyundoo Jeong

“…While various computational strategies for RNA structural alignment exist, they often come with high computational complexity. …”
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Mechanism of modified mRNA structure in COVID-19 vaccines for inducing neutralizing antibodies by Sabighoh Zanjabila, Beti Ernawati Dewi

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Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation by Cristina Pop, Silvi Rouskin, Nicholas T Ingolia, Lu Han, Eric M Phizicky, Jonathan S Weissman, Daphne Koller

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Ensemble refinement of mismodeled cryo-EM RNA structures using all-atom simulations by Elisa Posani, Pavel Janoš, Daniel Haack, Navtej Toor, Massimiliano Bonomi, Alessandra Magistrato, Giovanni Bussi

“…An analysis of all RNA-containing structures deposited in the Protein Data Bank reveals that this issue affects most cryo-EM structures in the 2.5–4 Å range. Thus, RNA structures determined by cryo-EM require careful handling, and our method may be broadly applicable to other RNA systems.…”
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Large-scale analysis of small molecule-RNA interactions using multiplexed RNA structure libraries by Ryosuke Nagasawa, Kazumitsu Onizuka, Kaoru R. Komatsu, Emi Miyashita, Hirotaka Murase, Kanna Ojima, Shunya Ishikawa, Mamiko Ozawa, Hirohide Saito, Fumi Nagatsugi

“…Abstract The large-scale analysis of small-molecule binding to diverse RNA structures is key to understanding the required interaction properties and selectivity for developing RNA-binding molecules toward RNA-targeted therapies. …”
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A conserved class of viral RNA structures regulates translation reinitiation through dynamic ribosome interactions by Madeline E. Sherlock, Conner J. Langeberg, Katherine E. Segar, Jeffrey S. Kieft

“…We determined the structure of a representative viral RNA-ribosome complex using cryoelectron microscopy (cryo-EM). 3D classification and variability analyses reveal that the viral RNA structure can sample a range of conformations while remaining tethered to the ribosome, enabling the ribosome to find a reinitiation start site within a limited range of mRNA sequence. …”
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CircZBTB44 promotes renal carcinoma progression by stabilizing HK3 mRNA structure by Tushuai Li, Yue Gu, Baocai Xu, Kamil Kuca, Jie Zhang, Wenda Wu

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The Unpaved Road of Non-Coding RNA Structure–Function Relationships: Current Knowledge, Available Methodologies, and Future Trends by Ana Lúcia Leitão, Francisco J. Enguita

“…The subjacent reasons for this relative lack of information regarding RNA structure are related to the specific chemical nature of RNA molecules and the limitations of the currently available methods for structural characterization of biomolecules. …”
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Mapping HIV-1 RNA structure, homodimers, long-range interactions and persistent domains by HiCapR by Yan Zhang, Jingwan Han, Xie Dejian, Wenlong Shen, Ping Li, Jian You Lau, Jingyun Li, Lin Li, Grzegorz Kudla, Zhihu Zhao

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Correction: CircZBTB44 promotes renal carcinoma progression by stabilizing HK3 mRNA structure by Tushuai Li, Yue Gu, Baocai Xu, Kamil Kuca, Jie Zhang, Wenda Wu

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Complete Colombian Caribbean loggerhead turtle mitochondrial genome: tRNA structure analysis and revisited marine turtle phylogeny by Javier Hernández-Fernández, Katherin Otálora

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Efficient translation initiation dictates codon usage at gene start by Kajetan Bentele, Paul Saffert, Robert Rauscher, Zoya Ignatova, Nils Blüthgen

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