A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study by Harpreet Kaur, Laura M. Shannon, Deborah A. Samac

Subjects: “…Crop pangenome…”
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Genomic insights into Brucella melitensis in India: stability of ST8 and the role of virulence genes in regional adaptations by Haris Ayoub, M. Suman Kumar, Rishabh Mehta, Sanjumon E. Sethuraj, Prasad Thomas, Himani Dhanze, Muskan Dubey, Harith M. Salih, Girish B. Chandrashekaraiah, Charley A. Cull, Ravindra P. Veeranna, Raghavendra G. Amachawadi

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Identifying genetic variations in emm89 Streptococcus pyogenes associated with severe invasive infections by Masayuki Ono, Masaya Yamaguchi, Daisuke Motooka, Yujiro Hirose, Kotaro Higashi, Tomoko Sumitomo, Tohru Miyoshi-Akiyama, Rumi Okuno, Takahiro Yamaguchi, Ryuji Kawahara, Hitoshi Otsuka, Noriko Nakanishi, Yu Kazawa, Chikara Nakagawa, Ryo Yamaguchi, Hiroo Sakai, Yuko Matsumoto, Tadayoshi Ikebe, Shigetada Kawabata

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Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families by Sidney C. Davis, Joseph Cerra, Laura E. Williams

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Small amounts of misassembly can have disproportionate effects on pangenome-based metagenomic analyses by Stephanie N. Majernik, Larry Beaver, Patrick H. Bradley

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Whole-genome recombination and dynamic accessory genomes drive the phenotypic diversity of Mycobacterium abscessus subspecies by Yu Chen, Rong Bao, Na Li, Tingting Fang, Xiaoyu Yin, Le Qin, Bijie Hu, Qing Miao

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Gene-trait matching among Bifidobacterium dentium strains reveals various glycan metabolism loci including a strain-specific fucosyllactose utilization cluster by Ortensia Catalano Gonzaga, Ortensia Catalano Gonzaga, Stephen McKenna, Ian O’Neill, Ian O’Neill, Paul D. Cotter, Paul D. Cotter, Fionnuala M. McAuliffe, Aidan Coffey, Aidan Coffey, Douwe van Sinderen, Douwe van Sinderen, Francesca Bottacini, Francesca Bottacini

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A survey of sequence-to-graph mapping algorithms in the pangenome era by Yingbo Cui, Chenchen Peng, Zeyu Xia, Canqun Yang, Yifei Guo

Subjects: “…Pangenome…”
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Nocardia genomes are a large reservoir of diverse gene content, biosynthetic gene clusters, and species-specific genes by Kiran Kumar Eripogu, Chun-Ping Yu, An-I Tsai, Jinn-Jy Lin, Hsiao-Ching Lin, Wen-Hsiung Li

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Pangenome graph mitigates heterozygosity overestimation from mapping bias: a case study in Chinese indigenous pigs by Jian Miao, Qingyu Wang, Zhe Zhang, Qishan Wang, Yuchun Pan, Zhen Wang

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Pear genomes display significant genetic diversity and provide novel insights into the fruit quality traits differentiation by Baopeng Ding, Haifei Hu, Yunpeng Cao, Ruirui Xu, Yujing Lin, Tahir ul Qamar Muhammad, Yuqin Song, Guangqi He, Youzhi Han, Huangping Guo, Jun Qiao, Jianguo Zhao, Xinxin Feng, Sheng Yang, Xuhu Guo, Rajeev Kumar Varshney, Liulin Li

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Genomic landscape of nosocomial Acinetobacter baumannii: A comprehensive analysis of the resistome, virulome, and mobilome by Sara Pearl, Anand Anbarasu

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Ecogenomic insights into the resilience of keystone Blastococcus Species in extreme environments: a comprehensive analysis by Imed Sbissi, Farah Chouikhi, Faten Ghodhbane-Gtari, Maher Gtari

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Comparative genomics profiling of Citrus species reveals the diversity and disease responsiveness of the GLP pangenes family by Muhammad Tahir ul Qamar, Kinza Fatima, Muhammad Junaid Rao, Qian Tang, Muhammad Sadaqat, Baopeng Ding, Ling-Ling Chen, Xi-Tong Zhu

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Comparative genomic analysis of enterobacterial clinical isolates reveals differences in resistome and stress signaling pathway by Sarah Sonbol, Nahla A. Hussein

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Geography, Antimicrobial Resistance, and Genomics of <i>Salmonella enterica</i> (Serotypes Newport and Anatum) from Meat in Mexico (2021–2023) by Eduardo Canek Reynoso, Enrique Jesús Delgado-Suárez, Cindy Fabiola Hernández-Pérez, Yaselda Chavarin-Pineda, Elizabeth Ernestina Godoy-Lozano, Geny Fierros-Zárate, Omar Alejandro Aguilar-Vera, Santiago Castillo-Ramírez, Luz del Carmen Sierra Gómez-Pedroso, Luisa María Sánchez-Zamorano

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Novel insights into carbohydrate utilisation, antimicrobial resistance, and sporulation potential in Roseburia intestinalis isolates across diverse geographical locations by Indrani Mukhopadhya, Jennifer C. Martin, Sophie Shaw, Martin Gutierrez-Torrejon, Nikoleta Boteva, Aileen J. McKinley, Silvia W. Gratz, Karen P. Scott

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Pangenome Data Analysis Reveals Characteristics of Resistance Gene Analogs Associated with <i>Sclerotinia sclerotiorum</i> Resistance in Sunflower by Yan Lu, Jiaying Huang, Dongqi Liu, Xiangjiu Kong, Yang Song, Lan Jing

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Genomic and Pangenomic Insights into <i>Aeromonas salmonicida</i> subsp. <i>oncorhynchi</i> subsp. nov. by Nihed Ajmi, Muhammed Duman, Hilal Ay, Izzet Burcin Saticioglu

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The complete genome sequences of Bacillus velezensis B26: a promising biocontrol agent and biofertilizer [version 2; peer review: 1 approved, 2 approved with reservations] by Sandeep Mallya, Kiran Kumar Kolathur, Subrahmanyam Volety Mallikarjuna, Venkatesh Kamath B

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