A multimodal Transformer Network for protein-small molecule interactions enhances predictions of kinase inhibition and enzyme-substrate relationships. by Alexander Kroll, Sahasra Ranjan, Martin J Lercher

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Tree polynomials identify a link between co-transcriptional R-loops and nascent RNA folding. by Pengyu Liu, Jacob Lusk, Nataša Jonoska, Mariel Vázquez

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Circadian distribution of epileptiform discharges in epilepsy: Candidate mechanisms of variability. by Isabella Marinelli, Jamie J Walker, Udaya Seneviratne, Wendyl D'Souza, Mark J Cook, Clare Anderson, Andrew P Bagshaw, Stafford L Lightman, Wessel Woldman, John R Terry

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Low-dimensional controllability of brain networks by Remy Ben Messaoud, Vincent Le Du, Camile Bousfiha, Marie-Constance Corsi, Juliana Gonzalez-Astudillo, Brigitte Charlotte Kaufmann, Tristan Venot, Baptiste Couvy-Duchesne, Lara Migliaccio, Charlotte Rosso, Paolo Bartolomeo, Mario Chavez, Fabrizio De Vico Fallani

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Excitatory-inhibitory homeostasis and bifurcation control in the Wilson-Cowan model of cortical dynamics. by Francisco Páscoa Dos Santos, Paul F M J Verschure

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Deciphering regulatory architectures of bacterial promoters from synthetic expression patterns. by Rosalind Wenshan Pan, Tom Röschinger, Kian Faizi, Hernan G Garcia, Rob Phillips

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Extracting the fingerprints of sequences of random rhythmic auditory stimuli from electrophysiological data. by Fernando A Najman, Antonio Galves, Marcela Svarc, Claudia D Vargas

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Extracting interpretable signatures of whole-brain dynamics through systematic comparison. by Annie G Bryant, Kevin Aquino, Linden Parkes, Alex Fornito, Ben D Fulcher

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Spherical harmonics texture extraction for versatile analysis of biological objects. by Oane Gros, Josiah B Passmore, Noa O Borst, Dominik Kutra, Wilco Nijenhuis, Timothy Fuqua, Lukas C Kapitein, Justin M Crocker, Anna Kreshuk, Simone Köhler

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Multi-region infectious disease prediction modeling based on spatio-temporal graph neural network and the dynamic model. by Xiaoyi Wang, Zhen Jin

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Role and modulation of various spinal pathways for human upper limb control in different gravity conditions. by Alice Bruel, Lina Bacha, Emma Boehly, Constance De Trogoff, Luca Represa, Gregoire Courtine, Auke Ijspeert

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Neural spiking for causal inference and learning. by Benjamin James Lansdell, Konrad Paul Kording

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Biomathematical enzyme kinetics model of prebiotic autocatalytic RNA networks: degenerating parasite-specific hyperparasite catalysts confer parasite resistance and herald the birt... by Magnus Pirovino, Christian Iseli, Joseph A Curran, Bernard Conrad

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Integration of partially observed multimodal and multiscale neural signals for estimating a neural circuit using dynamic causal modeling. by Jiyoung Kang, Hae-Jeong Park

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Social mates dynamically coordinate aggressive behavior to produce strategic territorial defense. by Nicole M Moody, Cole M Williams, Sohini Ramachandran, Matthew J Fuxjager

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Design and implementation of an asynchronous online course-based undergraduate research experience (CURE) in computational genomics. by Seema B Plaisier, Danielle O Alarid, Joelle A Denning, Sara E Brownell, Kenneth H Buetow, Katelyn M Cooper, Melissa A Wilson

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Ten quick tips to build a Model Life Cycle. by Timothée Poisot, Daniel J Becker, Cole B Brookson, Ellie Graeden, Sadie J Ryan, Gemma Turon, Colin Carlson

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Predicting lung aging using scRNA-Seq data. by Qi Song, Alex Singh, John E McDonough, Taylor S Adams, Robin Vos, Ruben De Man, Greg Myers, Laurens J Ceulemans, Bart M Vanaudenaerde, Wim A Wuyts, Xiting Yan, Jonas Schupp, James S Hagood, Naftali Kaminski, Ziv Bar-Joseph

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Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper. by Faye Orcales, Lucy Moctezuma Tan, Meris Johnson-Hagler, John Matthew Suntay, Jameel Ali, Kristiene Recto, Phelan Glenn, Pleuni Pennings

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Specificity and tunability of efflux pumps: A new role for the proton gradient? by Matthew Gerry, Duncan Kirby, Boian S Alexandrov, Dvira Segal, Anton Zilman

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