Breaking the Standard: Can Oxford Nanopore Technologies Sequencing Compete With Illumina in Protistan Amplicon Studies? by Dana Bludau, Guido Sieber, Manan Shah, Aman Deep, Jens Boenigk, Daniela Beisser

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Integrating sequencing methods with machine learning for antimicrobial susceptibility testing in pediatric infections: current advances and future insights by Zhuan Zou, Zhuan Zou, Fajuan Tang, Fajuan Tang, Lina Qiao, Lina Qiao, Sisi Wang, Sisi Wang, Haiyang Zhang, Haiyang Zhang

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Temperature-dependent shifts in gut microbiota and metabolome of olive flounder (Paralichthys olivaceus): implications for cold-water aquaculture expansion and probiotic applicatio... by Che-Chun Chen, Yu-Ping Chen, Hsiao-Tsu Yang, Yu-Ling Chen, Chen-Wei Wu, Hong-Yi Gong, Yuan-Shing Ho, Ying-Ning Ho

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Genetic and epigenetic biomarkers in human biomonitoring: why needed and how can Oxford Nanopore sequencing contribute? by Mathieu Gand, Adelheid Soubry, Birgit Mertens, Nancy H. C. Roosens, Sigrid C. J. De Keersmaecker

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A full-length 16S survey using Nanopore sequencing to uncover the bacterial microbiome in Ixodes ricinus ticks from a single UK woodland, collected across three springs (2019-2021) by Mia L. White, Jack M. Crook, Kayleigh M. Hansford, Daniel P. Carter, Michael J. Elmore, Colin Johnston, Sara Gandy, Kuiama Lewandowski, Alexander Vaux, Karen L. Osman, Richard Vipond, Jolyon M. Medlock, Edward J Feil, Steven T. Pullan

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Cancer liquid biopsies by Oxford Nanopore Technologies sequencing of cell-free DNA: from basic research to clinical applications by Hua-Qi Si, Peng Wang, Fei Long, Wei Zhong, Yuan-Dong Meng, Yuan Rong, Xiang-Yu Meng, Fu-Bing Wang

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Fecal microbiomes from screening sampling tubes are stable despite varying sampling and storage conditions by Anders Bech Jørgensen, Louise Almer, Birgitte Brandstrup, Lennart Friis-Hansen

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Evaluation of long-read sequencing for Ostreid herpesvirus type 1 genome characterization from Magallana gigas infected tissues by Aurélie Dotto-Maurel, Camille Pelletier, Lionel Degremont, Serge Heurtebise, Isabelle Arzul, Benjamin Morga, Germain Chevignon

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Comparative evaluation of sequencing technologies and primer sets for mouse gut microbiota profiling by Aleksandra Strokach, Polina Zoruk, Daria Boldyreva, Maxim Morozov, Evgenii Olekhnovich, Vladimir Veselovsky, Vladislav Babenko, Oksana Selezneva, Natalia Zakharevich, Andrey Larin, Severina Koldman, Severina Koldman, Vail Koldman, Vail Koldman, Maya Odorskaya, Roman Yunes, Vladislav Pavlov, Anna Kudryavtseva, Valeriy Danilenko, Ksenia Klimina, Ksenia Klimina

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Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? by Robert Lücking, M. Catherine Aime, Barbara Robbertse, Andrew N. Miller, Hiran A. Ariyawansa, Takayuki Aoki, Gianluigi Cardinali, Pedro W. Crous, Irina S. Druzhinina, David M. Geiser, David L. Hawksworth, Kevin D. Hyde, Laszlo Irinyi, Rajesh Jeewon, Peter R. Johnston, Paul M. Kirk, Elaine Malosso, Tom W. May, Wieland Meyer, Maarja Öpik, Vincent Robert, Marc Stadler, Marco Thines, Duong Vu, Andrey M. Yurkov, Ning Zhang, Conrad L. Schoch

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Long-read sequencing to detect full-length protein–protein interactions by Stephanie Schaefer-Ramadan, Yue Guan, Ayeda A. Ahmed, Jovana Aleksic, Khadija A. Elmagarmid, Leena F. Syed, Yasmin A. Mohamoud, Joel A. Malek

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Clinical metagenomics analysis of bacterial and fungal microbiota from sputum of patients suspected with tuberculosis infection based on nanopore sequencing by Pawarisa Terbtothakun, Suthida Visedthorn, Pavit Klomkliew, Prangwalai Chanchaem, Vorthon Sawaswong, Pavaret Sivapornnukul, Samitanan Sunantawanit, Ariya Khamwut, Suwatchareeporn Rotcheewaphan, Pornchai Kaewsapsak, Sunchai Payungporn

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Comparison of nanopore with illumina whole genome assemblies of the Epstein-Barr virus in Burkitt lymphoma by Isaac E. Kim, Abebe A. Fola, Enrique Puig, Titus Kipkemboi Maina, Sin Ting Hui, Hongyu Ma, Kaleb Zuckerman, Eddy O. Agwati, Alec Leonetti, Rebecca Crudale, Micah A. Luftig, Ann M. Moormann, Cliff Oduor, Jeffrey A. Bailey

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Utilizing Nanopore direct RNA sequencing of blood from patients with sepsis for discovery of co- and post-transcriptional disease biomarkers by Jingni He, Devika Ganesamoorthy, Jessie J.-Y. Chang, Jianshu Zhang, Sharon L. Trevor, Kristen S. Gibbons, Stephen J. McPherson, Jessica C. Kling, Luregn J. Schlapbach, Antje Blumenthal, Lachlan J. M. Coin, RAPIDS Study Group

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Full-length RNA-Seq of the RHOH gene in human B cells reveals new exons and splicing patterns by Frédéric Leprêtre, Jean-Pascal Meneboo, Céline Villenet, Laure Delestré, Bruno Quesnel, Carl Simon Shelley, Martin Figeac, Sylvie Galiègue-Zouitina

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Validation of a comprehensive long-read sequencing platform for broad clinical genetic diagnosis by Siddhartha Sen, Hillary P. Handler, Alec Victorsen, Zach Flaten, Aidan Ellison, Todd P. Knutson, Sarah A. Munro, Ryan J. Martinez, Charles John Billington, Jennifer J. Laffin, Sarah Bray, Pawel Mroz, Sophia Yohe, Andrew C. Nelson, Matthew Bower, Bharat Thyagarajan

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Culture-independent detection of Mycobacterium tuberculosis complex DNA using targeted next generation sequencing in African buffalo (Syncerus caffer) oronasal swabs in South Afric... by Sinegugu Kholeka Mhlophe, Charlene Clarke, Giovanni Ghielmetti, Giovanni Ghielmetti, Megan Matthews, Tanya Jane Kerr, Michele Ann Miller, Wynand Johan Goosen, Wynand Johan Goosen

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Development and validation of a carnitine cycle and transport disorders (CCD) panel: an ONT-compatible multi-gene diagnostic kit for newborn and selective screening by Gökçe Akan, Mehmet Cihan Balcı, Gülten Tuncel, Meryem Karaca, Hasan Hüseyin Kazan, Ahmet Çağlar Özketen, Özge Özgen, Gülden Fatma Gökçay, Fatmahan Atalar

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Optimizing fungal DNA extraction and purification for Oxford Nanopore untargeted shotgun metagenomic sequencing from simulated hemoculture specimens by Nattapong Langsiri, Wieland Meyer, Laszlo Irinyi, Navaporn Worasilchai, Nuttapon Pombubpa, Thidathip Wongsurawat, Piroon Jenjaroenpun, J. Jennifer Luangsa-ard, Ariya Chindamporn

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Exploring temperature-dependent transcriptomic adaptations in Yersinia pestis using direct cDNA sequencing by Oxford Nanopore Technologies by Brandon Robin, Alexandre Baillez, Servane Le Guillouzer, Cécile Lecoeur, Florent Sebbane, Sébastien Bontemps-Gallo

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