<i>Theobroma cacao</i> Virome: Exploring Public RNA-Seq Data for Viral Discovery and Surveillance by Gabriel Victor Pina Rodrigues, João Pedro Nunes Santos, Lucas Yago Melo Ferreira, Lucas Barbosa de Amorim Conceição, Joel Augusto Moura Porto, Eric Roberto Guimarães Rocha Aguiar

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Advancing periodontitis microbiome research: integrating design, analysis, and technology by Yibing Han, Pei-Hui Ding

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Optimising RNA extraction for paddy bulk soil samples for metatranscriptome sequencing by Sumitra Sivaprakasam, Tan Yee Fan, Yukgehnaish Kumarasan, Erneeza Mohd Hata, Ganesan Vadamalai, Bent Petersen, Thomas Sicheritz-Pontén, Sivachandran Parimannan, Heera Rajandas

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Insights into Octopus maya cathepsins from metatranscriptome and genome: structure evolutionary relationships and functional role prediction in digestive processes by Daisy Pineda-Suazo, Francisco Guillén-Chable, Wendy Itzel Escobedo-Hinojosa, Clara E. Galindo-Sánchez, Carlos Rosas

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Enhancing infectious intestinal disease diagnosis through metagenomic and metatranscriptomic sequencing of 1000 human diarrhoeal samples by Edward Cunningham-Oakes, Blanca M. Perez-Sepulveda, Yan Li, Jay C. D. Hinton, Charlotte A. Nelson, K. Marie McIntyre, Maya Wardeh, Sam Haldenby, Richard Gregory, Miren Iturriza-Gómara, Christiane Hertz-Fowler, Sarah J. O’Brien, Nigel A. Cunliffe, Alistair C. Darby, on behalf of the INTEGRATE consortium

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Virome Analysis Deciphers the First Virus Occurrence in Melothria scabra, Revealing Two Potyviruses, Including a Highly Divergent Zucchini Yellow Mmosaic Virus Isolate by Li-Juan Zhu, Jianhong Xing, Jingke Li, Weifan Lin, Yubin Chi, Jun Su, Juncheng Zhang, Zhongtian Xu

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Optimizing mouse metatranscriptome profiling by selective removal of redundant nucleic acid sequences by Morgan Roos, Samuel Bunga, Asako Tan, Erica Maissy, Dylan Skola, Alexander Richter, Daniel S. Whittaker, Paula Desplats, Amir Zarrinpar, Rick Conrad, Scott Kuersten

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Gastric Microbiota in Patients with Dyspepsia: Metatranscriptomic Analysis by Е. А. Kupriyanova, М. I. Markelova, Е. А. Ziyatdinova, D. D. Safina, A. G. Safin, I. М. Alieva, R. К. Zalyalov, R. А. Abdulkhakov, Т. V. Grigoryeva, S. R. Abdulkhakov

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Vaginal metatranscriptome meta-analysis reveals functional BV subgroups and novel colonisation strategies by Scott J. Dos Santos, Clara Copeland, Jean M. Macklaim, Gregor Reid, Gregory B. Gloor

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Synergistic gut microbiome-mediated degradation of Astragalus membranaceus polysaccharides and Codonopsis pilosula polysaccharides into butyric acid: a metatranscriptomic analysis by XinQian Rong, LingFeng Zhu, QingLong Shu

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Distinct survival strategies in oligotrophic and eutrophic ecotype Synechococcus-bacteria co-cultures under iron limitation and warming conditions by Bowen He, Yu Wang, Min Xu, David A. Hutchins, Fei-Xue Fu, Xiaomin Xia, Ran Duan, Ta-Hui Lin, Nianzhi Jiao, Qiang Zheng

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Multiomics comparative analysis of feces AMRGs of Duroc pigs and Tibetan and the effect of fecal microbiota transplantation on AMRGs upon antibiotic exposure by Tao Wang, Yuheng Luo, Xiangfeng Kong, Ling Fang, Liping Zhu, Bing Yu, Ping Zheng, Zhiqing Huang, Xiangbing Mao, Yu Jie, Junqiu Luo, Hui Yan, Jun He

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Metatranscriptomic analysis of colonic mucosal samples exploring the functional role of active microbial consortia in complicated diverticulitis by Brittney N. McMullen, Jeremy Chen See, Samantha Baker, Justin R. Wright, Samantha L. C. Anderson, Gregory Yochum, Walter Koltun, Austin Portolese, Nimalan A. Jeganathan, Regina Lamendella

Subjects: “…metatranscriptomics…”
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Metatranscriptomic Analysis Reveals Actively Expressed Antimicrobial-Resistant Genes and Their Hosts in Hospital Wastewater by Yusuke Ota, Fei Chen, Isaac Prah, Samiratu Mahazu, Kimiyo Watanabe, Teruaki Kinoshita, Yoshiaki Gu, Yoko Nukui, Ryoichi Saito

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Year-long, multiple-timepoint field studies show the importance of spatiotemporal dynamics and microbial functions in agricultural soil microbiomes by Lisa Joos, Sarah Ommeslag, Steve Baeyen, Wouter Asselberg, Koen Van Loo, Lieven Clement, Jane Debode, Bart Vandecasteele, Caroline De Tender

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Mining metagenomes and metatranscriptomes unveils viruses associated with cutaneous squamous cell carcinoma in hematopoietic stem cell transplant recipients by Jana K. Dickter, Yuqi Zhao, Vishwas Parekh, Huiyan Ma, Badri G. Modi, Wai-Yee Li, Saro H. Armenian, Xiwei Wu, Farah R. Abdulla

Subjects: “…mining metagenome and metatranscriptome…”
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Identification of shared viral sequences in peat moss metagenomes reveals elements of a possible Sphagnum core virome by Elizabeth R. Denison, Helena L. Pound, Eric R. Gann, Naomi E. Gilbert, David J. Weston, Dale A. Pelletier, Steven W. Wilhelm

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Viral activity in lake analogs of anoxic early Earth oceans by Natascha S. Varona, Bailey A. Wallace, Alice Bosco-Santos, Julianna Mullinax, Alexandra K. Stiffler, Molly D. O’Beirne, Josh Ford, James M. Fulton, Josef P. Werne, William P. Gilhooly, Cynthia B. Silveira

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Time-series metatranscriptomics reveals differential salinity effects on the methanogenic food web in paddy soil by Xi Zhou, Xin Li, Qicheng Bei, Xingjie Wu, Guihua Xu, Xiuzhu Dong, Werner Liesack, Zhenling Cui, Fusuo Zhang, Jingjing Peng

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Hormonal and transcriptomic regulation of drought adaptation in barley roots and leaves by Anna Collin, Magdalena Pacwa-Plociniczak, Tomasz Plociniczak, Ôndrej Novak, Marek Marzec, Wenbin Guo, Craig G. Simpson, Agata Daszkowska-Golec

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