Insights into optimization of oleaginous fungi – genome-scale metabolic reconstruction and analysis of Umbelopsis sp. WA50703 by Mikołaj Dziurzyński, Maksymilian E. Nowak, Maria Furman, Alicja Okrasińska, Julia Pawłowska, Marco Fondi

Subjects: “…Metabolic modelling…”
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Metabolic modelling reveals increased autonomy and antagonism in type 2 diabetic gut microbiota by A Samer Kadibalban, Axel Künstner, Torsten Schröder, Julius Zauleck, Oliver Witt, Georgios Marinos, Christoph Kaleta

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System-level characterization of engineered and evolved formatotrophic E. coli strains by Suzan Yilmaz, Boas Kanis, Rensco A.H. Hogers, Sara Benito-Vaquerizo, Jörg Kahnt, Timo Glatter, Beau Dronsella, Tobias J. Erb, Maria Suarez-Diez, Nico J. Claassens

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Transcriptomics resources of human tissues and organs by Mathias Uhlén, Björn M Hallström, Cecilia Lindskog, Adil Mardinoglu, Fredrik Pontén, Jens Nielsen

Subjects: “…genome‐scale metabolic models…”
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Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups by Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler

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Applications of genome‐scale metabolic reconstructions by Matthew A Oberhardt, Bernhard Ø Palsson, Jason A Papin

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A Guide to Metabolic Network Modeling for Plant Biology by Xiaolan Rao, Wei Liu

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Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome by Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike K Aurich, Ronan MT Fleming

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INVESTIGATION OF BIOKINETIC PECULIARITIES OF STRONTIUM-90 METABOLISM MODEL AND POSSIBILITY OF AN ESTIMATION OF RADIONUCLIDE INTAKE LEVEL BASING ON THE RESULTS OF THE MEASUREMENTS O... by V. S. Repin

Subjects: “…metabolism model…”
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A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration by Keren Yizhak, Sylvia E Le Dévédec, Vasiliki Maria Rogkoti, Franziska Baenke, Vincent C de Boer, Christian Frezza, Almut Schulze, Bob van de Water, Eytan Ruppin

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Host Plasma Microenvironment in Immunometabolically Impaired HIV Infection Leads to Dysregulated Monocyte Function and Synaptic Transmission Ex Vivo by Flora Mikaeloff, Marco Gelpi, Alejandra Escós, Tianqi Wang, Soham Gupta, Anna Olofsson, Sara Svensson Akusjärvi, Sabrina Schuster, Prajakta Naval, Vikas Sood, Negin Nikouyan, Andreas D. Knudsen, Beate Vestad, Julie Høgh, Johannes R. Hov, Thomas Benfield, Marius Trøseid, Vinay Pawar, Marijana Rucevic, Rui Benfeitas, Ákos Végvári, Liam O'Mahony, Rajkumar Savai, Niklas K. Björkström, Magda Lourda, João Pedro deMagalhães, Siegfried Weiss, Adil Mardinoglu, Mukesh Kumar Varshney, Annika C. Karlsson, Yasir Ahmed Syed, Susanne D. Nielsen, Ujjwal Neogi

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Improvement in the prediction power of an astrocyte genome-scale metabolic model using multi-omic data by Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Andrea Angarita-Rodríguez, Nicolás Mendoza-Mejía, Nicolás Mendoza-Mejía, Janneth González, Jason Papin, Jason Papin, Jason Papin, Andrés Felipe Aristizábal, Andrés Pinzón

Subjects: “…genome-scale metabolic models…”
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Metabolic reaction fluxes as amplifiers and buffers of risk alleles for coronary artery disease by Carles Foguet, Xilin Jiang, Scott C Ritchie, Elodie Persyn, Yu Xu, Chief Ben-Eghan, Henry J Taylor, Emanuele Di Angelantonio, John Danesh, Adam S Butterworth, Samuel A Lambert, Michael Inouye

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Minimization of proteome reallocation explains metabolic transition in hierarchical utilization of carbon sources by Zhihao Liu, Minghao Chen, Jingmin Hu, Yonghong Wang, Yu Chen

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Metabolic memory underlying minimal residual disease in breast cancer by Ksenija Radic Shechter, Eleni Kafkia, Katharina Zirngibl, Sylwia Gawrzak, Ashna Alladin, Daniel Machado, Christian Lüchtenborg, Daniel C Sévin, Britta Brügger, Kiran R Patil, Martin Jechlinger

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Understanding the physiology of Lactobacillus plantarum at zero growth by Philippe Goffin, Bert van de Bunt, Marco Giovane, Johan H J Leveau, Sachie Höppener‐Ogawa, Bas Teusink, Jeroen Hugenholtz

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Interplay of lung microbiome and epigenetics in former smokers: A machine learning and fuzzy logic approach on COPD progression by Hamidreza Taherkhani, Azadeh Kavianfar, Hossein Lanjanian, Nazanin Hosseinkhan, Mahdieh Salimi, Sajjad Nematzadeh, Mohammad Mehdi Naghizadeh, Sadegh Azimzadeh, Ali Masoudi-Nejad

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Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection by Hongzhong Lu, Feiran Li, Le Yuan, Iván Domenzain, Rosemary Yu, Hao Wang, Gang Li, Yu Chen, Boyang Ji, Eduard J Kerkhoven, Jens Nielsen

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Integration of clinical data with a genome‐scale metabolic model of the human adipocyte by Adil Mardinoglu, Rasmus Agren, Caroline Kampf, Anna Asplund, Intawat Nookaew, Peter Jacobson, Andrew J Walley, Philippe Froguel, Lena M Carlsson, Mathias Uhlen, Jens Nielsen

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In silico metabolic modelling links microbiome-derived metabolites to risk factors of Alzheimer’s disease by Tim Hensen, Shahzad Ahmad, Gabi Kastenmüller, Robert Kraaij, Mohsen Ghanbari, Arfan Ikram, Rima Kaddurah-Daouk, Ines Thiele

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