Human microbiome, applied to clinical practice by V. T. Ivashkin, K. V. Ivashkin

“…The aim of review. The Human microbiome project was designed for identification and characterization of set of human microorganisms as well as for studying the changes in the human health due to microbiome changes. …”
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The Urinary Microbiome: A Pediatric Urological Perspective by Sang Don Lee, Jae Min Chung

“…The human body is known to contain 1.3 to 10 times more microorganisms than human cells. The Human Microbiome Project was started in 2007 to characterize the human microbiome and analyze its role in human health and diseases. …”
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Gut microbiota: Historical essay and role in nephrology by Kirill S. Nezhdanov, Ludmila Yu. Milovanova, Svetlana Yu. Milovanova, Marina V. Taranova, Alexey V. Volkov, Tatiana V. Androsova

“…The next stage in the study of intestinal MB dates back to 1994 with the beginning of the use of 16s rRNA sequencing, metascience, and the organization of global projects for the MB study, the Human Microbiome Project and METAgenomics of the Human Intestinal Tract, the purpose of which is to study its composition and interaction with the body. …”
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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. by Susan M Huse, Les Dethlefsen, Julie A Huber, David Mark Welch, David A Relman, Mitchell L Sogin

“…This technique allows the cost-effective exploration of changes in microbial community structure, including the rare biosphere, over space and time and can be applied immediately to initiatives, such as the Human Microbiome Project.…”
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Comparative genomics and genome biology of Campylobacter showae by Tiffany Hsu, Matthew R. Gemmell, Eric A. Franzosa, Susan Berry, Indrani Mukhopadhya, Richard Hansen, Monia Michaud, Hans Nielsen, William G. Miller, Henrik Nielsen, Mona Bajaj-Elliott, Curtis Huttenhower, Wendy S. Garrett, Georgina L. Hold

“…Comparison of gene profiles with strains in Human Microbiome Project metagenomes showed that gut-derived isolates share genes specific to tongue dorsum and supragingival plaque counterparts. …”
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Multicohort study testing the generalisability of the SASKit-ML stroke and PDAC prognostic model pipeline to other chronic diseases by Daniel Palmer, Larissa Henze, Uwe Walter, Hugo Murua Escobar, Axel Kowald, Georg Fuellen

“…The datasets were chosen to mimic as closely as possible the SASKit cohort, a prospective, longitudinal cohort study.Data sources Public data were used from the T2D (77 patients with potential pre-diabetes and 18 controls) and IBD (49 patients with IBD and 12 controls) branches of the Human Microbiome Project (HMP), RA Map (RA-MAP, 92 patients with RA, 22 controls) and The Cancer Genome Atlas (TCGA, 16 cancers).Methods Data integration steps were performed in accordance with the prepublished study protocol, generating features to predict disease outcomes using 10-fold cross-validated random survival forests.Outcome measures Health deterioration was assessed using disease-specific clinical markers and endpoints across different cohorts. …”
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Human papillomavirus 16 mitigates Sneathia vaginalis-induced damage to cervical keratinocytes by Phoebe V. Bridy, Jasmine C. Cruz, Jada L. Covington, Taharah I. Islam, Catherine E. Hadley, Kayla Tran, Rachel Fry, Bradley A. Sheffield, Myrna Serrano, Gregory A. Buck, Jinlei Zhao, Katherine Y. Tossas, Craig Meyers, Iain M. Morgan, Claire D. James, Kimberly K. Jefferson

“…We analyzed 16S rRNA survey and HPV typing data from our Vaginal Human Microbiome Project and found, in agreement with other reports, that S. vaginalis was associated with HPV infection. …”
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