CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments by Ashley J. Waardenberg, Bassett Maya, Romaric Bouveret, Richard P. Harvey

Subjects: “…Gene Ontology…”
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An NLP-based method to mine gene and function relationships from published articles by Nilesh Kumar, M. Shahid Mukhtar

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A comprehensive machine learning for high throughput Tuberculosis sequence analysis, functional annotation, and visualization by Md. Saddam Hossain, Md. Parvez Khandocar, Farzana Akter Riti, Md. Yeakub Ali, Prithbey Raj Dey, S M Jahurul Haque, Amira Metouekel, Atrsaw Asrat Mengistie, Mohammed Bourhia, Farid Khallouki, Khalid S. Almaary

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LLMs in Action: Robust Metrics for Evaluating Automated Ontology Annotation Systems by Ali Noori, Pratik Devkota, Somya D. Mohanty, Prashanti Manda

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DIAMOND2GO: rapid Gene Ontology assignment and enrichment detection for functional genomics by Christopher Golden, David J. Studholme, Rhys A. Farrer

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In silico prediction of differentially expressed genes and functionally grouped networks in patients with inflamed pulp for screening pulpitis biomarkers by Azizeh Asadzadeh, Fatemeh Shams Moattar, Azam Moshfegh

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The risk of inbreeding versus outbreeding depression in managing an endangered and locally adapted population of a sedentary bird by Grace Walsh, Barry J. McMahon, Filip Thörn, Patrik Rödin‐Mörch, Martin Irestedt, Jacob Höglund

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The role of ontologies in machine learning: a case study of gene ontology by Qiaoyi Liu, Jian Qin

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Functional analysis of drought tolerance QTLs in two barley populations using BLAST on associated SNP sequencesFunctional analysis of drought tolerance QTLs in two barley populatio... by Arash Mohamadi, Omid Sofalian, Hossein Jafari, ali asghari, Farid Shekari, Seyed Mohamad Mahdi Mortazavian, fatemeh mohamadi azar

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A computational study of gene expression patterns in head and neck squamous cell carcinoma using TCGA data by Saqib Rauf, Sami Ullah, Muhammad Adil Abid, Asad Ullah, Gullzar Khan, Ainee Urooj Khan, Gulzar Ahmad, Muhammad Ijaz, Sidra Ahmad, Sulaiman Faisal

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Variation in flower frost tolerance among seven apple cultivars and transcriptome response patterns in two contrastingly frost-tolerant selected cultivars by Lee Je-Chang, Zebro Mewuleddeg, Jeong Haet-Nim, Heo Jae-Yun

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Comparative transcriptome analysis of bull X- and Y-spermatozoa by Sofi Imran Ul Umar, Sushil Prasad, Soumen Naskar, Pranab Jyoti Das, Mridula Sharma, Arunava Pattanayak, Dhanu Kumar Murasing, Vijai Pal Bhadana, Sujay Rakshit

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Exploring miRNA profile associated with cisplatin resistance in ovarian cancer cells by Yaman Alghamian, Chadi Soukkarieh, Abdulmunim Aljapawe, Hossam Murad

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Identification of Loci under Selection by Combining Different Methods in Thoroughbred and Turkmen Horses by Milad Hosseini, Hossein Moradi-shahrbabak

Subjects: “…gene ontology…”
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Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology by Giulia Antonazzo, Pascale Gaudet, Ruth C. Lovering, Helen Attrill

Subjects: “…Gene Ontology…”
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Differential regulation of apoptosis-related genes during long-term culture and differentiation of canine adipose-derived stem cells - a functional bioinformatical analysis by Maurycy Jankowski, Maurycy Jankowski, Maurycy Jankowski, Katarzyna Stefańska, Michał Suchodolski, Claudia Dompe, Claudia Dompe, Grzegorz Wąsiatycz, Bartosz Kempisty, Bartosz Kempisty, Bartosz Kempisty, Bartosz Kempisty, Michał Nowicki, Magdalena Roszak

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Transcriptomic Characterization Reveals Mitochondrial Involvement in Nrf2/Keap1-Mediated Osteoclastogenesis by Eiko Sakai, Takayuki Tsukuba

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Discovery of isomiRs in PBMCs of diseased vis-à-vis healthy Indian water buffaloes by Jasdeep Kaur Dhanoa, Jasdeep Singh, Amarjit Singh, Jaspreet Singh Arora, R. S. Sethi, C. S. Mukhopadhyay

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Mapping the proteome landscape of Indian Zebu (Sahiwal) spermatozoa using high-resolution mass spectrometry and in-silico annotation by Vanya Bhushan, Syed Azmal Ali, Abhishek Parashar, Sudarshan Kumar, Ashok Kumar Mohanty

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Exploring Differentially Expressed Genes and Immune Modulation in Diffuse Large B-Cell Lymphoma through RNA Sequencing Analysis by Nor Adzimah Johdi, Amanda Seng, Wei-Kang Lee, Hanif Zulkhairi Mohamad Said, Wan Fariza Wan Jamaluddin

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