A survey on deep learning based joint source-channel coding by Tianjie MU, Xiaohui CHEN, Yiyun WANG, Lupeng MA, Dong LIU, Jing ZHOU, Wenyi ZHANG

“…Classical information theory shows that separate source-channel coding is asymptotically optimal over a point-to-point channel.As modern communication systems are becoming more sensitive to delays and bandwidth,it becomes difficult to adopt the assumption that such separate designs have unlimited computing power for encoding and decoding.Compared to joint source-channel coding,separate coding has proven to be sub-optimal when the bandwidth is limited.However,conventional joint source-channel coding schemes require complicated design.In contrast,data-driven deep learning brings new designing ideas into the paradigm.A summary of relevant research results was provided,which will help to clarify the way in which deep learning methods solve the joint source-channel coding problem and to provide an overviewof new research directions.Source compression schemes and end-to-end communication system models were firstly introduced,both based on deep learning,then two kinds of joint coding designs under different types of source,and potential problems of joint source-channel coding based on deep learning and possible future research directions were introduced.…”
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GENES DETERMINING COLORATION OF DIFFERENT ORGANS IN WHEAT by E. K. Khlestkina

“…The data on comparative mapping together with the results of recent studies dedicated to cloning and functions of genes determining coloration in wheat suggest that these genes belong to the Myb- and Myc-like families of genes, encoding transcriptional activators for structural genes involved in plant flavonoid pigments biosynthesis.…”
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Designing an innovative closed-loop supply chain network considering economic and environmental aspects by Maryam Rahmaty

“…For this purpose, a priority-based encoding is presented, and the Pareto front resulting from solving different problems is compared. …”
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Phénomènes d’accommodation inter-sujets : le cas des reformulations introduites par OR by Blandine Pennec

“…Communication, whether it is written or oral, cannot be considered as the decoding, by the addressee(s), of messages that have simply been encoded by the speaker. Several factors constitute obstacles and prevent us from adopting such a basic pattern, such as the fact that representations are rarely shared by the speakers, that the latter sometimes use different language registers, and that speech also frequently contains mistakes or lacks adequacy with what the speaker really wants to say. …”
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CYP2A6 Polymorphisms May Strengthen Individualized Treatment for Nicotine Dependence by Yawo Mawuli Akrodou

“…The normal nicotine metabolizer CYP2A6*1A is associated with high scores of nicotine dependence (5–10) on the Fagerström Test for Nicotine Dependence (FTND) scale because it encodes for enzymes that catalyze nicotine 100%. Slow nicotine metabolizers (i.e., CYP2A6*1H, CYP2A6*4A, CYP2A6*9, and CYP2A6*12A) are associated with underrated nicotine metabolizing activity (50%–75%), linking them to low scores for nicotine dependence (0–4) on the FTND scale. …”
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Symmetry protected topological phases under decoherence by Jong Yeon Lee, Yi-Zhuang You, Cenke Xu

“…The type-II strange correlator encodes the full topological response of the decohered mixed state, reflecting the SPT state's pre-decoherence presence. …”
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Learning predictive signatures of HLA type from T-cell repertoires. by María Ruiz Ortega, Mikhail V Pogorelyy, Anastasia A Minervina, Paul G Thomas, Thierry Mora, Aleksandra M Walczak

“…T cells recognize a wide range of pathogens using surface receptors that interact directly with peptides presented on major histocompatibility complexes (MHC) encoded by the HLA loci in humans. Understanding the association between T cell receptors (TCR) and HLA alleles is an important step towards predicting TCR-antigen specificity from sequences. …”
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Illuminating understudied kinases: a generalizable biosensor development method applied to protein kinase N by Julius Bogomolovas, Ju Chen

“…Abstract Protein kinases play crucial roles in regulating cellular processes, making real-time visualization of their activity essential for understanding signaling dynamics. While genetically encoded fluorescent biosensors have emerged as powerful tools for studying kinase activity, their development for many kinases remains challenging due to the lack of suitable substrate peptides. …”
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When HSFs bring the heat—mapping the transcriptional circuitries of HSF-type regulators in Candida albicans by Sadri Znaidi

“…The genome of the opportunistic yeast Candida albicans encodes four HSF members, namely, Sfl1, Sfl2, Skn7, and the essential regulator, Hsf1. …”
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Pharmacological approaches in drug-resistant pediatric epilepsies caused by pathogenic variants in potassium channel genes by Ilaria Filareto, Ilaria Mosca, Elena Freri, Francesca Ragona, Laura Canafoglia, Roberta Solazzi, Barbara Castellotti, Giuliana Messina, Cinzia Gellera, Maria Virginia Soldovieri, Paolo Ambrosino, Maurizio Taglialatela, Jacopo C. DiFrancesco, Tiziana Granata

“…Variants in genes encoding for voltage-gated K+ (Kv) channels are frequent cause of drug-resistant pediatric epilepsies. …”
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Quantifying the spatial patterns of retinal ganglion cell loss and progression in optic neuropathy by applying a deep learning variational autoencoder approach to optical coherence... by Jui-Kai Wang, Jui-Kai Wang, Brett A. Johnson, Zhi Chen, Zhi Chen, Honghai Zhang, Honghai Zhang, David Szanto, Brian Woods, Brian Woods, Michael Wall, Young H. Kwon, Young H. Kwon, Edward F. Linton, Edward F. Linton, Andrew Pouw, Mark J. Kupersmith, Mark J. Kupersmith, Mark J. Kupersmith, Mona K. Garvin, Mona K. Garvin, Mona K. Garvin, Mona K. Garvin, Randy H. Kardon, Randy H. Kardon

“…The encoder decomposes input ganglion cell layer (GCL) thickness maps into two display latent variables (dLVs) and eight booster latent variables (bLVs). …”
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Adaptation for Staphylococcus aureus to hosts via insertion mutation in the accessory gene regulator agrC gene: decreased virulence and enhanced persistence capacity by Jiawei Chen, Yun Wu, Ying Zhu, Li Zhang, Yingchun Xu, Yali Liu

“…Transcriptomic analysis revealed that 23B upregulated surface protein-encoding genes while simultaneously reducing the expression levels of virulence factors, highlighting the intricate regulatory adjustments facilitating its persistence and reducing pathogenic potential. …”
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Pan-cancer analysis of the transcriptional expression of histone acetylation enzymes in solid tumors defines a new classification scheme for gliomas by Junhao Zhang, Lingbo Li, Aiwei Tang, Chucheng Wang, Yupeng Wang, Yongqi Hu, Guangting He, Guangting He, Wangjun Liao, Wangjun Liao, Wangjun Liao, Rui Zhou

“…IntroductionThe altered expression of genes encoding histone acetyltransferases (HATs) and histone deacetylases (HDACs) has been implicated in the tumorigenesis and progression of various solid tumors. …”
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Genotypic difference in response to copper stress in upland cotton as revealed by physiological and molecular expression analyses by Jianfei Wu, Tao Wang, Yin Huang, Shuiping Xiao, Xiaoxia Luo, Yanfeng Deng, Xiu Yang, Qingquan Kong, Feiyu Tang

“…Additionally, A2304 may impede the root cell wall from binding Cu ions by enhancing the pectin methylesterification degree by up-regulating GhPMEI3 and GhPMEI9 encoding pectin methylesterase inhibitor and stabilizing the cell wall organization by down-regulating GhPLY8 and GhPLY20 encoding pectate lyases. …”
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Single Dose of Attenuated Vaccinia Viruses Expressing H5 Hemagglutinin Affords Rapid and Long-Term Protection Against Lethal Infection with Highly Pathogenic Avian Influenza A H5N1... by Fumihiko Yasui, Keisuke Munekata, Tomoko Fujiyuki, Takeshi Kuraishi, Kenzaburo Yamaji, Tomoko Honda, Sumiko Gomi, Misako Yoneda, Takahiro Sanada, Koji Ishii, Yoshihiro Sakoda, Hiroshi Kida, Shosaku Hattori, Chieko Kai, Michinori Kohara

“…Results: rLC16m8-mcl2.2 hemagglutinin (HA) and rLC16m8-mcl2.3.4 HA consisted of a recombinant LC16m8 vector encoding the HA protein from clade 2.2 or clade 2.3.4 viruses (respectively); rDIs-mcl2.2 HA consisted of a recombinant DIs vector encoding the HA protein from clade 2.2. …”
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Feasibility of Muscle Synergy Outcomes in Clinics, Robotics, and Sports: A Systematic Review by Juri Taborri, Valentina Agostini, Panagiotis K. Artemiadis, Marco Ghislieri, Daniel A. Jacobs, Jinsook Roh, Stefano Rossi

“…Even though the neural encoding of muscle synergies remains controversial, a large number of papers demonstrated that muscle synergies are robust across different tested conditions, which are within a day, between days, within a single subject, and between subjects that have similar demographic characteristics. …”
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Growth on Alpha-Ketoglutarate Increases Oxidative Stress Resistance in the Yeast Saccharomyces cerevisiae by Maria Bayliak, Nadia Burdyliuk, Volodymyr Lushchak

“…The presence of genes encoding SODs or catalases is required for the expression of protective effects of AKG.…”
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The evolutionarily diverged single-stranded DNA-binding proteins SSB1/SSB2 differentially affect the replication, recombination and mutation of organellar genomes in Arabidopsis th... by Weidong Zhu, Jie Qian, Yingke Hou, Luke R. Tembrock, Liyun Nie, Yi-Feng Hsu, Yong Xiang, Yi Zou, Zhiqiang Wu

“…In Arabidopsis thaliana, SSBs are encoded by a small family of two genes (SSB1 and SSB2). …”
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SOST and DKK: Antagonists of LRP Family Signaling as Targets for Treating Bone Disease by James J. Mason, Bart O. Williams

“…Point mutations were identified that encoded forms of LRP5 associated with very high bone mass (HBM). …”
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Bright and stable anti-counterfeiting devices with independent stochastic processes covering multiple length scales by Junfang Zhang, Adam Creamer, Kai Xie, Jiaqing Tang, Luke Salter, Jonathan P. Wojciechowski, Molly M. Stevens

“…Current PUF devices are often based on a single stochastic process, which can be broken, especially since their practical encoding capacities can be significantly lower than the theoretical value. …”
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