Metaproteomics reveals age-specific alterations of gut microbiome in hamsters with SARS-CoV-2 infection by Marybeth Creskey, Fabiola Silva Angulo, Qing Wu, Levi Tamming, Emily E. F. Fekete, Kai Cheng, Zhibin Ning, Angela Wang, Patrícia Brito Rodrigues, Vinícius de Rezende Rodovalho, Marco Aurélio Ramirez Vinolo, Daniel Figeys, Xuguang Li, Francois Trottein, Xu Zhang

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Identification of spastic ataxia-related proteins via comparative proteomic analysis of the cerebellum of conditional Ankfy1 knockout mice by Rong Fu, Man Ding, Tong Yin, Linlin Zheng, Yue Liu, Hang Yu, Rumeng Zhou, Zuneng Lu

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Data-independent acquisition-based proteome profiling of red blood cells from dairy buffaloes under different types of heat stress by Qin Lan, Zhao-bing Gu

Subjects: “…Data-independent acquisition…”
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MetS: an interactive application to identify metabolites in liquid chromatography-mass spectrometry experiments with data independent acquisition by Daniel Estevan Garcia-Niño, Liliana Lopez-Kleine, Federico Roda-Fornaguera

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Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial by Christina Ludwig, Ludovic Gillet, George Rosenberger, Sabine Amon, Ben C Collins, Ruedi Aebersold

Subjects: “…data‐independent acquisition…”
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Stage-dependent proteomic alterations in aqueous humor of diabetic retinopathy patients based on data-independent acquisition and parallel reaction monitoring by Yeanqi Jin, Junbin Liu, Xueli Zhang, Liang Zhang, Ying Cui, Xiaoyang Luo, Haoxian Zhu, Zhifan Chen, Mengya Liu, Xiyu Wu, Xinyu Chen, Shuoxin Liao, Guanrong Wu, Xiang Fang, Qianli Meng

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LC-QTOF-MSE with MS1-based precursor ion quantification and SiMD-assisted identification enhances human urine metabolite analysis by Alongkorn Kurilung, Suphitcha Limjiasahapong, Kwanjeera Wanichthanarak, Weerawan Manokasemsan, Khwanta Kaewnarin, Kassaporn Duangkumpha, Siriphan Manocheewa, Rossarin Tansawat, Roongruedee Chaiteerakij, Intawat Nookaew, Yongyut Sirivatanauksorn, Sakda Khoomrung

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4D-Fast Data-Independent Acquisition Quantitative Proteomic Identification and Functional Analysis of Differentially Expressed Proteins between Selenium-Enriched and Non-Selenium-E... by YUAN Lin, ZHAO Wenzhu, WU Chunjian, YU Yiding, YU Zhipeng

Subjects: “…egg; natural selenium-enriched; non-selenium-enriched; proteomics; 4d-fast data-independent acquisition…”
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Rapid and high-yield recovery of plasma-derived extracellular vesicles using modified chromatography with soluble protein depletion for biomarker discovery by Yang You, Zhengrong Zhang, Samuel Cortes, Son N. Nguyen, Prakruthi Vadakattu, Bridgette C. Melvin, Sean D. Jr Mann, Nibedita Basu Ray, Maria Bregendahl, Pam J. McLean, Maria Paz Gonzalez-Perez, Seiko Ikezu, Tsuneya Ikezu

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Analysis of p53-Independent Functions of the Mdm2-MdmX Complex Using Data-Independent Acquisition-Based Profiling by Anu Jain, Rafaela Muniz de Queiroz, Jayanta K. Chakrabarty, Karl A. T. Makepeace, Carol Prives, Lewis M. Brown

Subjects: “…data-independent acquisition…”
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Mass Spectrometry-Based Workflow for the Identification and Quantification of Alternative and Canonical Proteins in Pancreatic Cancer Cells by Clémence Guillon, Carole Pichereaux, Ikrame Lazar, Karima Chaoui, Emmanuelle Mouton-Barbosa, Mehdi Liauzun, Edith Gourbeyre, Pinar Altiner, David Bouyssié, Alexandre Stella, Odile Burlet-Schiltz, Serge Plaza, Yvan Martineau, Bertrand Fabre

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Human exposure to green spaces and monoterpenes: discovery and use of α-pinene metabolites as biomarkers by Zhengzhi Xie, Saurin R. Sutaria, Jin Y. Chen, Hong Gao, Daniel J. Conklin, Rachel J. Keith, Sanjay Srivastava, Pawel Lorkiewicz, Aruni Bhatnagar

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A comparison of SWATH-MS methods for measurement of residual host cell proteins in adeno-associated virus preparations by Thomas M. Leibiger, Lie Min, Kelvin H. Lee

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