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221
Annulatascus nilensis sp. nov., a new freshwater ascomycete from the River Nile, Egypt
Published 2011-06-01“…Phylogenetic analyses of its LSU rDNA sequence with similar fungi placed the new species in the genus Annulatascus (Annulatascaceae, Sordariomycetidae incertae sedis). …”
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Molecular characterization, chemical profile and biological properties of essential oils from Chamaemelum nobile (L.) flowers of Morocco: in vitro and in silico studies
Published 2025-02-01“…Phylogenetic analysis of the DNA sequence revealed a 99.22% similarity with Chamaemelum nobile (L.).ConclusionThese results demonstrate the significant potential of Moroccan CN-EO in phytomedicine. …”
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224
Penicillium menonorum, a new species related to P. pimiteouiense
Published 2011-12-01“…On the basis of phylogenetic analysis of DNA sequences from four loci, P. menonorum occurs in a clade with P. pimiteouiense, P. vinaceum, P. guttulosum, P. rubidurum, and P. parvum. …”
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225
Immobilized Native Bacteria as a Tool for Bioremediation of Soils and Waters: Implementation and Modeling
Published 2002-01-01“…Based on 3,4-dihydroxyphenylacetate (3,4-DHPA) dioxygenase amino acid sequence and DNA sequence data for homologous genes, two different oligonucleotides were designed. …”
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226
A survey of the Sli gene in wild and cultivated potato
Published 2024-05-01“…DNA sequences in one group contain the 533 bp insertion upstream of the start codon identified previously in self‐compatible potato. …”
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227
What is Scirrhia?
Published 2011-12-01“…Recent collections on stems of a fern, Pteridium aquilinum (Dennstaedtiaceae) in Brazil, led to the discovery of a new species of Scirrhia, described here as S. brasiliensis. Based on DNA sequence data of the nuclear ribosomal DNA (LSU), Scirrhia is revealed to represent a member of Dothideomycetes, Capnodiales, Mycosphaerellaceae. …”
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228
Effects of elongation delay in transcription dynamics
Published 2014-08-01“…In the transcription process, elongation delay is induced by the movement of RNA polymerases (RNAP) along the DNA sequence, and can result in changes in the transcription dynamics. …”
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229
Survey on Encoding Schemes for Genomic Data Representation and Feature Learning—From Signal Processing to Machine Learning
Published 2018-09-01“…In machine learning, DNA sequences are often converted to numerical values for data representation and feature learning in various applications. …”
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230
The Mechanisms Underlying Chronic Inflammation in Rheumatoid Arthritis from the Perspective of the Epigenetic Landscape
Published 2016-01-01“…Epigenetic mechanisms regulate chromatin state and gene transcription without any change in DNA sequence, resulting in the alteration of phenotypes in several cell types, especially RASFs. …”
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231
A universal method for the purification of C2H2 zinc finger arrays.
Published 2025-01-01“…By incorporating a surface-exposed terminal cysteine residue that enables site-specific conjugation with maleimide-activated fluorophores, we confirm the suitability of these probes for in situ labeling of specific DNA sequences in human cells.…”
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232
POLYMORPHISM AND INTERSPECIFIC VARIABILITY OF CYTOCHROME OXYDASE SUBUNIT I (COI) GENE NUCLEOTIDE SEQUENCE IN SIBLING SPECIES of A AND B Anopheles messeae AND An. beklemishevi (DIPT...
Published 2014-12-01“…Species identification of159 individuals of the Anopheles maculipennis complex from 5 localities ofUral andSiberia was conductedbyPCR-RFLP ITS2. The DNA sequences ofa COI gene fragment were determinedin 124 individuals from the localities. …”
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233
International Mycological Congress: Guiding Vote on nomenclature proposals to amend Chapter F of the International Code of Nomenclature for algae, fungi, and plants
Published 2018-12-01“…Tw o proposals F-005 and F-006, both concerning DNA sequences as types, exceeded the 75 % No vote that is the threshold above which proposals are considered rejected by the FNS unless formally re-introduced. …”
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234
Advanced delivery systems for gene editing: A comprehensive review from the GenE-HumDi COST Action Working Group
Published 2025-03-01“…Genome editing can be performed using various platforms, where programmable DNA nucleases create permanent genetic changes at specific genomic locations due to their ability to recognize precise DNA sequences. Clinical application of this technology requires the delivery of the editing reagents to transplantable cells ex vivo or to tissues and organs for in vivo approaches, often representing a barrier to achieving the desired editing efficiency and safety. …”
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235
First records of Oxychilus alliarius and O. cellarius (Gastropoda, Stylommatophora, Oxychilidae) in Mexico: mtDNA identification and potential distributions
Published 2025-01-01“…These three introduced land snail species were identified by combining their genital anatomy and mitochondrial COI DNA sequence data. A two-dimensional geometric morphometric analysis of shell shape variation based on both apertural and apical views showed that there were no significant conchological differences between the three species except, to some degree, size. …”
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236
Primary Cutaneous Follicle Centre Lymphoma with Hodgkin and Reed-Sternberg Like Cells: A Case Report and Review of the Literature
Published 2017-01-01“…Fluorescence in situ hybridization studies did not detect the presence of IgH-bcl2 fusion transcript, and molecular studies were negative for immunoglobulin heavy chain gene rearrangements and EBV DNA sequences. Hodgkin and Reed-Sternberg like cells are rarely reported in FLs, and the association with primary cutaneous follicle centre lymphoma is extremely rarely seen. …”
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237
Genomic Characterization and Functional Validation of Six <i>cis</i>-Regulatory Sequences in Medicinal Plant <i>Andrographis paniculata</i>
Published 2025-01-01“…With the rapid development of plant biotechnologies, such as transgenesis and gene editing tools, plant-derived CRSs have gradually replaced traditional CRSs, like the <i>35S</i> promoter, to avoid some negative effects caused by exogenous DNA sequences. In this study, we provided a comprehensive analysis of the published genomic data of <i>Andrographis paniculata</i> and identified six candidate <i>ApACRs</i>. …”
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238
New records and unusual morphology of the cave hydrozoan Velkovrhia enigmatica Matjašič & Sket, 1971 (Cnidaria: Hydrozoa: Bougainvilliidae)
Published 2013-12-01“…The mitochondrial DNA sequences in populations from both caves did not differ. …”
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239
The Histone Modification Code in the Pathogenesis of Autoimmune Diseases
Published 2017-01-01“…Histone modifications regulate the chromatin states and gene transcription without any change in the DNA sequence, possibly resulting in phenotype alteration in several different cell types. …”
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Russian Science Foundation grant No. 20-14-00140 supported this study. The authors are thankful to the multi-access Center “Bioinformatics” for the use of computational resources a...
Published 2023-01-01“…Our previous studies presented our publicly available Web service Plant_SNP_TATA_Ztester, which makes it possible to estimate the equilibrium dissociation constant (KD) of TBP complexes with plant proximal promoters (as output data) using 90 bp of their DNA sequences (as input data). In this work, by means of this bioinformatics tool, 363 gene promoter DNA sequences representing 43 plant species were analyzed. …”
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