Modification and analysis of context-specific genome-scale metabolic models: methane-utilizing microbial chassis as a case study by M. A. Kulyashov, R. Hamilton, Y. Afshin, S. K. Kolmykov, T. S. Sokolova, T. M. Khlebodarova, M. G. Kalyuzhnaya, I. R. Akberdin

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Comprehensive metabolite profiling and evaluation of anti-nociceptive and anti-inflammatory potencies of Nypa fruticans (Wurmb.) leaves: Experimental and in-silico approaches by Farhana Islam, Md. Aktaruzzaman, Md. Tarikul Islam, Fariya Islam Rodru, Saquiba Yesmine

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Multiangle Social Network Recommendation Algorithms and Similarity Network Evaluation by Jinyu Hu, Zhiwei Gao, Weisen Pan

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The protein structurome of Orthornavirae and its dark matter by Pascal Mutz, Antonio Pedro Camargo, Harutyun Sahakyan, Uri Neri, Anamarija Butkovic, Yuri I. Wolf, Mart Krupovic, Valerian V. Dolja, Eugene V. Koonin

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Cancer cells avoid ferroptosis induced by immune cells via fatty acid binding proteins by Maria Angelica Freitas-Cortez, Fatemeh Masrorpour, Hong Jiang, Iqbal Mahmud, Yue Lu, Ailing Huang, Lisa K. Duong, Qi Wang, Tiffany A. Voss, Claudia S. Kettlun Leyton, Bo Wei, Wai-Kin Chan, Kevin Lin, Jie Zhang, Efrosini Tsouko, Shonik Ganjoo, Hampartsoum B. Barsoumian, Thomas S. Riad, Yun Hu, Carola Leuschner, Nahum Puebla-Osorio, Jing Wang, Jian Hu, Michael A. Davies, Vinay K. Puduvalli, Cyrielle Billon, Thomas P. Burris, Philip L. Lorenzi, Boyi Gan, James W. Welsh

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Next-Generation Sequencing and Epigenomics Research: A Hammer in Search of Nails by Shrutii Sarda, Sridhar Hannenhalli

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Efficient Mining of Interesting Patterns in Large Biological Sequences by Md. Mamunur Rashid, Md. Rezaul Karim, Byeong-Soo Jeong, Ho-Jin Choi

“…., DNA sequences) is one of the most challenging tasks in computational biology and bioinformatics. So far, in most approaches, the number of occurrences is a major measure of determining whether a pattern is interesting or not. …”
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Genome Assembly and Genome Annotation of Leishmania martiniquensis Isolated from a Leishmaniasis Patient in Thailand by Songtham Anuntakarun, Atchara Phumee, Vorthon Sawaswong, Kesmanee Praianantathavorn, Witthaya Poomipak, Rungrat Jitvaropas, Padet Siriyasatien, Sunchai Payungporn

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In Silico Identification of New Anti-SARS-CoV-2 Main Protease (Mpro) Molecules with Pharmacokinetic Properties from Natural Sources Using Molecular Dynamics (MD) Simulations and Hi... by Harrison Onyango, Patrick Odhiambo, David Angwenyi, Patrick Okoth

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Depth-corrected multi-factor dissection of chromatin accessibility for scATAC-seq data with PACS by Zhen Miao, Jianqiao Wang, Kernyu Park, Da Kuang, Junhyong Kim

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Monkeypox: Origin, Transmission, Clinical Manifestations, Prevention, and Therapeutic Options by Sajal Kumar Halder, Arafin Sultana, Mahbubul Kabir Himel, Aparna Shil

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Clustering Large-Scale Biomedical Data to Model Dynamic Accumulation Processes in Disease Progression and Anti-Microbial Resistance Evolution by Kazeem A. Dauda, Olav N. L. Aga, Iain G. Johnston

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Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server by Sunghoon Jung, Se-Eun Bae, Insung Ahn, Hyeon S. Son

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Structural insights into distinct mechanisms of RNA polymerase II and III recruitment to snRNA promoters by Syed Zawar Shah, Thomas N. Perry, Andrea Graziadei, Valentina Cecatiello, Thangavelu Kaliyappan, Agata D. Misiaszek, Christoph W. Müller, Ewan P. Ramsay, Alessandro Vannini

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Association between Levels of IgA Antibodies to Tissue Transglutaminase and Gliadin-Related Nonapeptides in Dermatitis Herpetiformis by Justyna Gornowicz-Porowska, Monika Bowszyc-Dmochowska, Agnieszka Seraszek-Jaros, Elżbieta Kaczmarek, Marian Dmochowski

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A bird’s-eye view of the biological mechanism and machine learning prediction approaches for cell-penetrating peptides by Maduravani Ramasundaram, Honglae Sohn, Thirumurthy Madhavan

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Application of the ABC Algorithm in Parameter Estimation and Kinetic Model Selection in Propionic Fermentation by Waldecleia Queiroz Da Costa, Miguel Fernando Saraiva Maia, Nilton Pereira Da Silva, Deibson Silva Da Costa, Emerson Cardoso Rodrigues, Diego Cardoso Estumano

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Structural Properties of G,T-Parallel Duplexes by Anna Aviñó, Elena Cubero, Raimundo Gargallo, Carlos González, Modesto Orozco, Ramon Eritja

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Orthologous marker groups reveal broad cell identity conservation across plant single-cell transcriptomes by Tran N. Chau, Prakash Raj Timilsena, Sai Pavan Bathala, Sanchari Kundu, Bastiaan O. R. Bargmann, Song Li

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scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq by E. Ravza Gur, Jim R. Hughes

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