Mpox clade I outbreak: how should Asia prepare and respond? by Poh Lian Lim, Wilnard Yeong Tze Tan, Shawn Vasoo

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Clade 2.3.4.4b but not historical clade 1 HA replicating RNA vaccine protects against bovine H5N1 challenge in mice by David W. Hawman, Thomas Tipih, Eddie Hodge, E. Taylor Stone, Nikole Warner, Natalie McCarthy, Brian Granger, Kimberly Meade-White, Shanna Leventhal, Kiara Hatzakis, Stephanie Park, Karen Gaffney, Kyle Rosenke, Jesse H. Erasmus, Heinz Feldmann

“…A repRNA encoding the HA of a clade 1 H5 from 2004 (A/Vietnam/1203/2004) as utilized by some stockpiled vaccines, confers only partial protection. …”
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Development and Validation of LAMP Assays for Distinguishing MPXV Clades with Fluorescent and Colorimetric Readouts by Nazente Atceken, Sara Asghari Dilmani, Ahmed Choukri Abdullah, Mutlu Sarıkaya, Defne Yigci, Gozde Korkmaz, Savas Tasoglu

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Mpox (monkeypox): a comprehensive updated of current epidemic evidence by Amir Hossain, Md. Abdul Monem, Mamunur Rahman, Rashadur Raza

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National antibiotic consumption is strongly related to the prevalence of antibiotic resistance across bacterial clades by Stilianos Louca

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Rearranging the Bird’s Nest Fungi: molecular review of internal clades in Cyathus (Nidulariaceae, Basidiomycota) by Rhudson Henrique Santos Ferreira da Cruz, Jefferson dos Santos Góis, Paulo Marinho, Iuri Goulart Baseia, Kentaro Hosaka

“…The monophyly of Cyathus was confirmed with maximum support in both tests, and the infrageneric groups of the most recent classification were unchanged, but the clade striatum showed segregation into four groups and three subgroups. …”
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Uncovering Diversity within the Glomeromycota: Novel Clades, Family Distributions, and Land Use Sensitivity by Camille S. Delavaux, Alexis Aellen, Sidney L. Stürmer, Silmar Primieri, Ursel M. E. Schütte, Devin M. Drown, Robert J. Ramos, Thomas W. Crowther, James D. Bever

“…Using a recently developed pipeline for phylogenetic placement of eDNA, we find evidence for three putative novel clades within the Glomeromycota, sister to Entrophosporaceae, Glomeraceae, and Archaeosporaceae, with evidence for geographic structuring. …”
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Phylobook: a tool for display, clade annotation and extraction of sequences from molecular phylogenies by Jeffrey C Furlong, Peter D Darley, Wenjie Deng, James I Mullins, Roger E Bumgarner

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Short-term evolution and dispersal patterns of fluconazole-resistance in Candida auris clade III by Irving Cancino-Muñoz, Juan Vicente Mulet-Bayona, Carme Salvador-García, Nuria Tormo-Palop, Remedios Guna, Concepción Gimeno-Cardona, Fernando González-Candelas

“…The phylogenetic diversity of the yeast is clustered in five major clades, among which clade III is particularly relevant, as most of its strains exhibit resistance to fluconazole, reducing the therapeutic alternatives and provoking outbreaks that are difficult to control. …”
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Phylogenomic approaches reveal a robust time-scale phylogeny of the Terminal Fusarium Clade by Andrés Felipe Lizcano Salas, Jorge Duitama, Silvia Restrepo, Adriana Marcela Celis Ramírez

“…Abstract The Terminal Fusarium Clade (TFC) is a group in the Nectriaceae family with agricultural and clinical relevance. …”
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A functional approach to analyze the genetic basis for differences in virulence of monkeypox virus clades by Patricia L. Earl, Jeffrey L. Americo, Sara Reynolds, Wei Xiao, Catherine Cotter, Bernard Moss

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Phylodynamic reconstruction of major chicken infectious anemia virus clades epidemiology, dispersal, and evolution by Giovanni Franzo, Matteo Legnardi, Francesca Poletto, Riccardo Baston, Giulia Faustini, Mattia Cecchinato, Claudia Maria Tucciarone

“…CIAV, recognized globally for decades, shows a significant genetic diversity, but its implications remain underexplored.MethodsThis study analyzed over 1,000 VP1 sequences and examined CIAV’s epidemiology, evolution, and spread with various phylodynamic and phylogeographic approaches.ResultsFindings suggest that CIAV likely originated in Japan in the early 20th century, followed by worldwide diversification in two main clades. Both clades exhibited no significant competition and similar global patterns, characterized by a progressive increase until about 2000, when a transient decline was observed for some years, potentially reflecting the increasing use of vaccines. …”
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Complete Genome Sequence Analysis of the First Imported Mpox Virus Clade Ib Variant in China by Yin Song, Yong Yan, Jingyu Xu, Shencong Lv, Ganglin Ren, Yamei Zhou, Wanchen Song, Rui Ge, Peihua Xu, Guoying Zhu, Zhongwen Chen

“…Here, we analyzed the whole gene sequence of imported MPXV clade Ib variant from the first infection case detected in China. …”
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Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont by Shan Zhang, Weizhi Song, Geogios Marinos, Silvio Waschina, Johannes Zimmermann, Christoph Kaleta, Torsten Thomas

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Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene by Robert G. Nichols, Emily R. Davenport

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High speciation in the cryptic Pristimantis celator clade (Anura: Strabomantidae) of the Mira river basin, Ecuador-Colombia by Mario H. Yánez-Muñoz, Juan P. Reyes-Puig, Carolina Reyes-Puig, Gabriela Lagla-Chimba, Christian Paucar-Veintimilla, Miguel A. Urgiles-Merchán, Julio C. Carrión-Olmedo

“…This study focuses on the phylogenetic and systematic revision of a frog clade initially labeled as Pristimantis verecundus, revealing significant cryptic diversity. …”
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Multivalent S2 subunit vaccines provide broad protection against Clade 1 sarbecoviruses in female mice by Peter J. Halfmann, Raj S. Patel, Kathryn Loeffler, Atsuhiro Yasuhara, Lee-Ann Van De Velde, Jie E. Yang, Jordan Chervin, Chloe Troxell, Min Huang, Naiying Zheng, Elizabeth R. Wright, Paul G. Thomas, Patrick C. Wilson, Yoshihiro Kawaoka, Ravi S. Kane

“…These results demonstrate that our S2-based vaccines provide broad protection against clade 1 sarbecoviruses and offer insight into the mechanistic basis for protection.…”
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Clade-1 Vap virulence proteins of Rhodococcus equi are associated with the cell surface and support intracellular growth in macrophages by Zeynep Yerlikaya, Raúl Miranda-CasoLuengo, Yuting Yin, Cheng Cheng, Wim G. Meijer

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Possible scenarios for the spread of mpox outside the endemic focus in Africa by Eskild Petersen, Ulrik Hvid, Oyewale Tomori, Anders Gorm Pedersen, Jacco Wallinga, Richard Pebody, Orlando Cenciarelli, Preben Aavitsland, David Van Laeken, Viggo Andreasen, Uffe Schneider, Julia Kinane Simonsen, Marlies Jilles Francine Goedknegt, Caroline Klint Johannesen, Jens D. Lundgren, Anders Koch, Bolette Søborg, Anna Mia Ekström, Hannah Nohynek, Frank M. Aarestrup, Tyra G. Krause, Lone Simonsen

Subjects: “…Mpox clades…”
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Varicella Outbreak in an Indian Couple Living in Germany Caused by VZV Clade VI Acquired during a Trip to The Netherlands by Malgorzata Kolesnik, Bernd Bonnekoh, Ina Tammer, Harald Gollnick, Andreas Sauerbrei

“…Varicella-zoster virus (VZV), the cause of varicella and zoster, is divided into five major clades and four provisional clades, the latter of which have been rarely reported worldwide to date. …”
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