De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses by Donglai Xiao, Lu Ma, Chi Yang, Zhenghe Ying, Xiaoling Jiang, Yan-quan Lin

“…We then performed comparative and phylogenetic analyses, which indicate that S. latifolia is closely related to a few species in the antrodia clade including Fomitopsis pinicola, Wolfiporia cocos, Postia placenta, and Antrodia sinuosa. …”
Get full text

Eilat virus isolated from Culex univittatus mosquitoes from the Namibian Zambezi Region influences in vitro superinfection with alpha- and flaviviruses in a virus-species-dependent... by Heiko D Guggemos, Anne Kopp, Katrin Voigt, Matthias Fendt, Selina L Graff, John K E Mfune, Christian Borgemeister, Sandra Junglen

“…MP458-NA-2018 grouped with EILV in phylogenetic analysis and was placed within the clade of insect-specific alphaviruses. The virus was isolated in mosquito cells and shown to be restricted to insects as hosts by the inability to infect different vertebrate cell lines and a complete block of virus replication at 34°C. …”
Get full text

Is Avian influenza virus still threatening humans? Preventative measures and treatment by Jacek Fordymacki, Ryszard Łagowski, Julia Kosęda, Barbara Fetner

“…The Zoonotic influenza vaccines contains a strain matching the currently circulating clade to ensure protection. Effective plans will not succeed without the will to implement and execute them. …”
Get full text

Trichoderma collection from Brazilian soil reveals a new species: T. cerradensis Sp. nov. by Gustavo Henrique Silva Peixoto, Rildo Alexandre Fernandes da Silva, Ana Beatriz Zacaroni, Thais França Silva, Priscila Chaverri, Priscila Chaverri, Danilo Batista Pinho, Sueli Corrêa Marques de Mello

“…However, two isolates formed a clade apart from previously identified species from Sect. …”
Get full text

Global diversity and phylogeny of Incrustoporiaceae (Polyporales, Basidiomycota) with an emphasis on Skeletocutis by Zhan-Bo Liu, Hong-Gao Liu, Josef Vlasák, Genevieve M. Gates, Zhen-Hao Li, Yu-Cheng Dai, Yuan Yuan

“…Phylogenetic analyses also clarified the taxonomic positions of Skeletocutis and Tyromyces within the Incrustoporiaceae family, showing that Tyromyces is nested within the polyphyletic Skeletocutis clade. The morphological distinctions between Skeletocutis and Tyromyces, as well as between Skeletocutis and Sidera, are also discussed.…”
Get full text

Trajectory of human migration: insights from autosomal and non-autosomal variant clustering patterns by Samayeta Sarkar Tuli, Joyatry Sarker, Mrinmoy Saha Roddur, Anik Biswas, Reefa Nawar, Tahmina Akter, Md. Wahid Murad, Abu Ashfaqur Sajib

“…While autosomal and X-chromosomal variants cluster the populations of similar geographic regions together, Y-chromosomal variants constantly place the East Asian Japanese and the European Finnish populations in a single clade in hierarchical clusters. This comprehensive genome-wide analysis essentially introduces new insights into mapping the path of human migration based on the Y-chromosomal and other chromosomal variants. [ J Adv Biotechnol Exp Ther 2025; 8(1.000): 139-149]…”
Get full text

Complete Genome Sequence of Turnip yellows polerovirus from Iraq: Insight into the Factors Affecting the Genetic Variability of TuYV Populations by Muhannad Al-Waeli, Shirin Farzadfar, Reza Pourrrahim

“…Full genome sequences indicated two main phylogroups, however, using ORF0, TuYV isolates clustered in four clades. Clade I was further divided into two subclades (IA and IB), where the Iraqi isolate fell into IB. …”
Get full text

Identification of an ethylene-responsive and cell wall-secreting β-1,3-glucanase, VvGLU1, in the early cell regrowth of grape winter buds triggered by exogenous dormancy releasers by Zhaowan Shi, Jiamin Wu, Hairuo Mo, Weiwen Xue, Zhaoqi Zhang, Xuequn Pang

“…Forty-eight VvGLUs distributed in clades α, β, and γ were identified and nominated based on the genome data of V. vinifera. …”
Get full text

Molecular Identification, Histopathology and Antibiotic Susceptibility Profiling of Aeromonas veronii Isolated from Oreochromis niloticus in Bangladesh by Sayed Mashequl Bari, Mohammad Muttakinul Islam, Aktia Amina, Marufa Khatun, A. M. Shahabuddin

“…MT071624) in the NCBI BLAST search, and in the phylogenetic tree, they grouped in a single clade. This close genetic relationship is also supported by the low genetic distance between the isolates. …”
Get full text

MOLECULAR STUDY OF THE RED-LEGGED HAM BEETLE NECROBIA RUFIPES (DE GEER, 1775) (COLEOPTERA: CLERIDAE) FROM THE ERBIL PROVINCE OF THE KURDISTAN REGION, IRAQ by H. M. Muhammad, P. A. Jalil, N. A. Mawlood, K. M. Taha

“…The species from the Kurdistan region in this study were clustered in a monophyletic clade published in Germany (KU916741.1) with a high identity value (100%). …”
Get full text

Molecular identification and phylogenetic relationship of Bangladeshi pufferfish based on mitochondrial COI and 16S rRNA genes by Md Sagir Ahmed, Nafisa Islam, Durjoy Raha Antu, Mysha Mahjabin, Sujan Kumar Datta, Osamu Arakawa

“…The Neighbor-Joining (NJ) phylogenetic analysis of COI and 16S rRNA gene sequences revealed that the corresponding species were clustered together in the same clade. Results of cluster sequence analyses revealed seven Operational Taxonomic Units (OTUs). …”
Get full text

Chromosome-Level Genome Assembly and Annotation of the Highly Heterozygous <i>Phallus echinovolvatus</i> Provide New Insights into Its Genetics by Mengya An, Ruoxi Liang, Yanliu Chen, Jinhua Zhang, Xiuqing Wang, Xing Li, Guohua Qu, Junfeng Liang

“…Phylogenetic and collinearity analysis revealed a close evolutionary relationship between <i>P. echinovolvatus</i> and <i>Clathrus columnatus</i> in the core Phallales clade. Hap1 and Hap2 had sizes of 35.46 Mb and 36.11 Mb, respectively. …”
Get full text

Diversity and antimicrobial resistance profiles of Mycobacterium avium complex clinical isolates in Thailand based on whole genome comparative analysis by Vorthon Sawaswong, Kanphai Wongjarit, Suthidee Petsong, Yonita Yuliani, Ubonwan Somsukpiroh, Kiatichai Faksri, Taya Forde, Sunchai Payungporn, Suwatchareeporn Rotcheewaphan

“…The pan-genome analysis presented clade-specific proteins for M. intracellulare, such as PE and PPE protein families. …”
Get full text

Evaluation of humoral immune response and milk antibody transfer in calves and lactating cows vaccinated with inactivated H5 avian influenza vaccine by Mohamed Samy Abousenna, Nermeen G. Shafik, Mahmoud M. Abotaleb

“…This study evaluated the efficacy of various doses of an inactivated H5 AI vaccine in cattle and assessed antibody transfer in milk against a recent bovine isolate of HPAI A(H5N1, clade 2.3.4.4b). Calves were inoculated with different vaccine doses, while lactating cows received the vaccine four weeks later. …”
Get full text

The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication by Muhammad Abdullah, Agnelo Furtado, Ardashir Kharabian Masouleh, Pauline Okemo, Robert Henry

“…We utilized long read sequencing (PacBio HiFi) and chromatin mapping (Hi-C) to produce de novo chromosomal level genomes of Oryza meridionalis, the most divergent AA gnome species, and the unique Australian Oryza rufipogon like taxon that is a sister to the clade of domesticated and wild AA genome rice species of Asia and Africa. …”
Get full text

The formation and the study of a collection of the Miscanthus resource species gene pool in the conditions of the West Siberian forest steppe by O. V. Dorogina, O. Yu. Vasilyeva, N. S. Nuzhdina, I. V. Buglova, E. V. Zhmud, G. A. Zueva, O. V. Kominа, I. S. Kuban, A. S. Gusar, R. V. Dudkin

“…According to the results of the ISSR-analysis, 16 samples of three Miscanthus species were divided into two clades: Sinensis and Sacchariflorus, the former including two subclades. …”
Get full text

Sinistroporomonorchis bolini n. sp. (Trematoda: Monorchiidae) from the Ocellated killifish, Floridichthys polyommus (Cyprinodontidae) in the Yucatán Peninsula, Mexico based on an i... by Leopoldo Andrade-Gómez, Juan F. Espínola-Novelo, Brenda Solórzano-García, Gerardo Pérez-Ponce de León

“…Phylogenetic trees inferred from each dataset, placed all the specimens in a monophyletic clade, confirming that the isolates belonged to the same species. …”
Get full text

Epidemiological monitoring of avian influenza in the Republic of Crimea in 2019–2020 by D. V. Gadzevich, S. I. Danylchenko, N. V. Vorotilova, M. A. Pasunkina, V. A. Uppe, V. N. Irza, M. S. Volkov, N. G. Zinyakov

“…The comparative genetic analysis of 258 bp nucleic acid sequences of the AIV H gene fragment showed that the identified isolate belongs to the Asian genetic lineage of highly pathogenic AIV subtype H5 (clade 2.3.4.4) associated with the epidemic spread in Asia, Europe, the Middle East and Africa in 2016–2020.…”
Get full text

Molecular phylogenetics of the Ophiocordyceps sinensis-species complex lineage (Ascomycota, Hypocreales), with the discovery of new species and predictions of species distribution by Yongdong Dai, Siqi Chen, Yuanbing Wang, Yao Wang, Zhuliang Yang, Hong Yu

“…Additionally, based on the phylogenetic construction of Ophiocordyceps, a special clade was focused phylogenetically on the more closely related O. sinensis complex, which was defined as the O. sinensis- species complex lineage. …”
Get full text

How to resolve cryptic species of polypores: an example in Fomes by Ursula Peintner, Regina Kuhnert-Finkernagel, Viana Wille, Franco Biasioli, Anton Shiryaev, Claudia Perini

“…A detailed examination of a number of different Fomes strains that had been collected and isolated from different habitats in Italy and Austria confirmed the presence of distinct lineages in the Fomes fomentarius clade. Our zero hypothesis was that the Mediterranean strains growing on Quercus represent a species which can be delimited based on morphological and physiological characters when they are evaluated in statistically relevant numbers. …”
Get full text