Detection of Trypanosoma cruzi in white-eared opossums (Didelphis albiventris) from Canoinhas, Santa Catarina State, Brazil by Giane Helenita Pontarolo, Daniela Pedrassani, Luís Felipe Kühl, Monique Paiva Campos, Thais Cristina Tirado, Fabiano Borges Figueiredo, Thállitha Samih Wischral Jayme Vieira, Ana Cláudia Calchi, Marcos Rogério André, Rafael Felipe da Costa Vieira, Ivan Roque de Barros Filho

“…The phylogenetic analysis model allocated all sequences obtained from D. albiventris to the large TcI clade of T. cruzi. This study provides the first record of T. cruzi in white-eared opossums in Canoinhas, Santa Catarina, southern Brazil.…”
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RESULTS OF EXPERIMENTAL INFECTION OF TURKEYS WITH A/DUCK/ALTAI/469/14 H5N1 STRAIN OF AVIAN INFLUENZA VIRUS by V. Yu. Sosipatorova, D. A. Altunin, I. A. Chvala, N. S. Mudrak, D. B. Andreychuk

“…The data on experimental infection of 6-week-old Big-6 cross turkeys with an epidemic A/duck/Altai/469/14 H5N1 clade 2.3.2.1c strain of avian influenza virus are presented. …”
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Extensive paralogism in the environmental pangenome: a key factor in the ecological success of natural SAR11 populations by Carmen Molina-Pardines, Jose M. Haro-Moreno, Francisco Rodriguez-Valera, Mario López-Pérez

“…Abstract Background The oceanic microbiome is dominated by members of the SAR11 clade. Despite their abundance, challenges in recovering the full genetic diversity of natural populations have hindered our understanding of the eco-evolutionary mechanisms driving intra-species variation. …”
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A glimpse into the biogeography, seasonality, and ecological functions of arctic marine Oomycota by Brandon T. Hassett, Marco Thines, Anthony Buaya, Sebastian Ploch, R. Gradinger

“…Oomycota are a group of fungal-like organisms that comprise a major clade of eukaryotic life and are parasites of fish, agricultural crops, and algae. …”
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Dispensable genome and segmental duplications drive the genome plasticity in Fusarium solani by Abbeah Navasca, Jatinder Singh, Viviana Rivera-Varas, Upinder Gill, Gary Secor, Thomas Baldwin

“…Fusarium solani is a species complex encompassing a large phylogenetic clade with diverse members occupying varied habitats. …”
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Genotypic Profiling of Bacillus cereus Recovered from Some Retail Foods in Ogun State, Nigeria, and Their Phylogenetic Relationship by Titilayo O. Adesetan, Moses O. Efuntoye, Olubukola O. Babalola

“…Conventional methods rarely differentiate bacteria of the same species into clade, neither can it describe their ancestral lineage. …”
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De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses by Donglai Xiao, Lu Ma, Chi Yang, Zhenghe Ying, Xiaoling Jiang, Yan-quan Lin

“…We then performed comparative and phylogenetic analyses, which indicate that S. latifolia is closely related to a few species in the antrodia clade including Fomitopsis pinicola, Wolfiporia cocos, Postia placenta, and Antrodia sinuosa. …”
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Trichoderma collection from Brazilian soil reveals a new species: T. cerradensis Sp. nov. by Gustavo Henrique Silva Peixoto, Rildo Alexandre Fernandes da Silva, Ana Beatriz Zacaroni, Thais França Silva, Priscila Chaverri, Priscila Chaverri, Danilo Batista Pinho, Sueli Corrêa Marques de Mello

“…However, two isolates formed a clade apart from previously identified species from Sect. …”
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Global diversity and phylogeny of Incrustoporiaceae (Polyporales, Basidiomycota) with an emphasis on Skeletocutis by Zhan-Bo Liu, Hong-Gao Liu, Josef Vlasák, Genevieve M. Gates, Zhen-Hao Li, Yu-Cheng Dai, Yuan Yuan

“…Phylogenetic analyses also clarified the taxonomic positions of Skeletocutis and Tyromyces within the Incrustoporiaceae family, showing that Tyromyces is nested within the polyphyletic Skeletocutis clade. The morphological distinctions between Skeletocutis and Tyromyces, as well as between Skeletocutis and Sidera, are also discussed.…”
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Trajectory of human migration: insights from autosomal and non-autosomal variant clustering patterns by Samayeta Sarkar Tuli, Joyatry Sarker, Mrinmoy Saha Roddur, Anik Biswas, Reefa Nawar, Tahmina Akter, Md. Wahid Murad, Abu Ashfaqur Sajib

“…While autosomal and X-chromosomal variants cluster the populations of similar geographic regions together, Y-chromosomal variants constantly place the East Asian Japanese and the European Finnish populations in a single clade in hierarchical clusters. This comprehensive genome-wide analysis essentially introduces new insights into mapping the path of human migration based on the Y-chromosomal and other chromosomal variants. [ J Adv Biotechnol Exp Ther 2025; 8(1.000): 139-149]…”
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Identification of an ethylene-responsive and cell wall-secreting β-1,3-glucanase, VvGLU1, in the early cell regrowth of grape winter buds triggered by exogenous dormancy releasers by Zhaowan Shi, Jiamin Wu, Hairuo Mo, Weiwen Xue, Zhaoqi Zhang, Xuequn Pang

“…Forty-eight VvGLUs distributed in clades α, β, and γ were identified and nominated based on the genome data of V. vinifera. …”
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Molecular Identification, Histopathology and Antibiotic Susceptibility Profiling of Aeromonas veronii Isolated from Oreochromis niloticus in Bangladesh by Sayed Mashequl Bari, Mohammad Muttakinul Islam, Aktia Amina, Marufa Khatun, A. M. Shahabuddin

“…MT071624) in the NCBI BLAST search, and in the phylogenetic tree, they grouped in a single clade. This close genetic relationship is also supported by the low genetic distance between the isolates. …”
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Molecular identification and phylogenetic relationship of Bangladeshi pufferfish based on mitochondrial COI and 16S rRNA genes by Md Sagir Ahmed, Nafisa Islam, Durjoy Raha Antu, Mysha Mahjabin, Sujan Kumar Datta, Osamu Arakawa

“…The Neighbor-Joining (NJ) phylogenetic analysis of COI and 16S rRNA gene sequences revealed that the corresponding species were clustered together in the same clade. Results of cluster sequence analyses revealed seven Operational Taxonomic Units (OTUs). …”
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Chromosome-Level Genome Assembly and Annotation of the Highly Heterozygous <i>Phallus echinovolvatus</i> Provide New Insights into Its Genetics by Mengya An, Ruoxi Liang, Yanliu Chen, Jinhua Zhang, Xiuqing Wang, Xing Li, Guohua Qu, Junfeng Liang

“…Phylogenetic and collinearity analysis revealed a close evolutionary relationship between <i>P. echinovolvatus</i> and <i>Clathrus columnatus</i> in the core Phallales clade. Hap1 and Hap2 had sizes of 35.46 Mb and 36.11 Mb, respectively. …”
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Evaluation of humoral immune response and milk antibody transfer in calves and lactating cows vaccinated with inactivated H5 avian influenza vaccine by Mohamed Samy Abousenna, Nermeen G. Shafik, Mahmoud M. Abotaleb

“…This study evaluated the efficacy of various doses of an inactivated H5 AI vaccine in cattle and assessed antibody transfer in milk against a recent bovine isolate of HPAI A(H5N1, clade 2.3.4.4b). Calves were inoculated with different vaccine doses, while lactating cows received the vaccine four weeks later. …”
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The genomes of the most diverse AA genome rice species provide a resource for rice improvement and studies of rice evolution and domestication by Muhammad Abdullah, Agnelo Furtado, Ardashir Kharabian Masouleh, Pauline Okemo, Robert Henry

“…We utilized long read sequencing (PacBio HiFi) and chromatin mapping (Hi-C) to produce de novo chromosomal level genomes of Oryza meridionalis, the most divergent AA gnome species, and the unique Australian Oryza rufipogon like taxon that is a sister to the clade of domesticated and wild AA genome rice species of Asia and Africa. …”
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The formation and the study of a collection of the Miscanthus resource species gene pool in the conditions of the West Siberian forest steppe by O. V. Dorogina, O. Yu. Vasilyeva, N. S. Nuzhdina, I. V. Buglova, E. V. Zhmud, G. A. Zueva, O. V. Kominа, I. S. Kuban, A. S. Gusar, R. V. Dudkin

“…According to the results of the ISSR-analysis, 16 samples of three Miscanthus species were divided into two clades: Sinensis and Sacchariflorus, the former including two subclades. …”
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Sinistroporomonorchis bolini n. sp. (Trematoda: Monorchiidae) from the Ocellated killifish, Floridichthys polyommus (Cyprinodontidae) in the Yucatán Peninsula, Mexico based on an i... by Leopoldo Andrade-Gómez, Juan F. Espínola-Novelo, Brenda Solórzano-García, Gerardo Pérez-Ponce de León

“…Phylogenetic trees inferred from each dataset, placed all the specimens in a monophyletic clade, confirming that the isolates belonged to the same species. …”
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Epidemiological monitoring of avian influenza in the Republic of Crimea in 2019–2020 by D. V. Gadzevich, S. I. Danylchenko, N. V. Vorotilova, M. A. Pasunkina, V. A. Uppe, V. N. Irza, M. S. Volkov, N. G. Zinyakov

“…The comparative genetic analysis of 258 bp nucleic acid sequences of the AIV H gene fragment showed that the identified isolate belongs to the Asian genetic lineage of highly pathogenic AIV subtype H5 (clade 2.3.4.4) associated with the epidemic spread in Asia, Europe, the Middle East and Africa in 2016–2020.…”
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Molecular phylogenetics of the Ophiocordyceps sinensis-species complex lineage (Ascomycota, Hypocreales), with the discovery of new species and predictions of species distribution by Yongdong Dai, Siqi Chen, Yuanbing Wang, Yao Wang, Zhuliang Yang, Hong Yu

“…Additionally, based on the phylogenetic construction of Ophiocordyceps, a special clade was focused phylogenetically on the more closely related O. sinensis complex, which was defined as the O. sinensis- species complex lineage. …”
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