Genetic Diversity of Echinococcus granulosus in Southwest China Determined by the Mitochondrial NADH Dehydrogenase Subunit 2 Gene by Jiahai Wang, Ning Wang, Dandan Hu, Xiuqin Zhong, Shuxian Wang, Xiaobin Gu, Xuerong Peng, Guangyou Yang

“…We detected 19 haplotypes, which formed a distinct clade with the standard sheep strain (G1). Hence, all 51 isolates were identified as E. granulosus sensu stricto (G1–G3). …”
Get full text

A single mutation in dairy cow-associated H5N1 viruses increases receptor binding breadth by Marina R. Good, Monica L. Fernández-Quintero, Wei Ji, Alesandra J. Rodriguez, Julianna Han, Andrew B. Ward, Jenna J. Guthmiller

“…Abstract Clade 2.3.4.4b H5N1 is causing an unprecedented outbreak in dairy cows in the United States. …”
Get full text

Phylogeny and taxonomy of Nigroporus (Polyporales, Basidiomycota) with four new species from Asia and Oceania by Xiang-Lin Li, Yu-Cheng Dai, Zhan-Bo Liu, Yu-Han Jiang, Hong-Gao Liu, Yuan Yuan

“…The 2-gene (ITS+nLSU) analysis of the Steccherinaceae indicated that the four new species nested in the Nigroporus clade. The 3-gene (ITS+nLSU+TEF1) analysis of the genus Nigroporus showed that N. australianus formed a monophyletic lineage, N. subvinosus was sister to N. austroasianus and N. yunnanensis, and N. austroasianus was sister to N. yunnanensis. …”
Get full text

Transcriptional activity of ammonia oxidisers in response to soil temperature, moisture and nitrogen amendment by Chris Chisholm, Hong Di, Keith Cameron, Andriy Podolyan, Jupei Shen, Limei Zhang, Kosala Sirisena, Xueying Che

“…Within the AOA community a member of the Nitrosocosmicus clade was positively correlated with ammonium and estimated ammonia concentrations. …”
Get full text

Anthracophyllum sontraense (Omphalotaceae, Agaricales), A New Species from Danang, Vietnam by Trung Thanh Nguyen, Hanh Hong Do, Toan Nguyen-Sy, Uyen Thi Diem Huynh, Nguyen Thi Lam Hai, Thi Thanh Tam Phan, Thi Thu Hoai Nguyen, Do Tan Khang, Phu Thi Tran

“…The phylogenetic analyses based on the combined internal transcribed spacer (ITS) and Large Subunit (LSU) molecular markers of ribosomal RNA genes revealed that the two specimens clustered in a single clade at species level with all tested Anthracophyllum species with strong bootstrap support of 99%. …”
Get full text

A new species of Astragalus (Fabaceae) from the Irano-Turanian biodiversity hotspot: an integrative approach by Zahra Karbalaei, Ali Bagheri, Ali Asghar Maassoumi, Twan Rutten, Frank R. Blattner

“…Molecular phylogenetic analysis using ITS and ycf1 sequences reveals that A. kuzehrashensis forms a clade with A. chehreganii and A. hakkianus, although it exhibits genetic differences. …”
Get full text

Structural basis of Spliced Leader RNA recognition by the Trypanosoma brucei cap-binding complex by Harald Bernhard, Hana Petržílková, Barbora Popelářová, Kamil Ziemkiewicz, Karolina Bartosik, Marcin Warmiński, Laura Tengo, Henri Gröger, Luciano G. Dolce, Cameron D. Mackereth, Ronald Micura, Jacek Jemielity, Eva Kowalinski

“…Abstract Kinetoplastids are a clade of eukaryotic protozoans that include human parasitic pathogens like trypanosomes and Leishmania species. …”
Get full text

Molecular Detection of Anaplasma phagocytophilum in Small Mammals and Infesting Ticks in Laikipia County, Kenya by Erick Titus Mosha, Joseph K. N. Kuria, Moses Otiende, Isaac Lekolool

“…Comparison was also made with a known pathogenic A. phagocytophilum variant HA and a nonpathogenic variant 1 that were clustered into a distinctive clade different form haplotypes detected in this study. …”
Get full text

Near-Complete Avipoxvirus Genome Assembled from Skin Lesions of Dead Eurasian Crane (<i>Grus grus</i>) by Eszter Kaszab, Endre Sós, Krisztina Bali, Viktória Sós-Koroknai, Edina Perge, Krisztina Ursu, Szilvia Marton, Márton Hoitsy, Gábor Kemenesi, Krisztián Bányai

“…Phylogenetic analysis of the gene encoding the DNA polymerase revealed that the crane poxvirus clustered in clade A, subclade A3. A large fragment of the poxvirus genome (306,477 bp in length) was assembled from the DNA of a skin specimen. …”
Get full text

Differences in gut microbial diversity and composition between growth phenotypes of farmed juvenile sandfish, Holothuria scabra by Joselito A. Tabardillo, Marie Antonette Juinio-Meñez, Adam M. Reitzel, Rachel Ravago-Gotanco

“…Small juveniles had a higher abundance of members from the Roseobacter clade (Rhodobacteriaceae) such as Ruegeria, Shimia, Psuedoruegeria and Marivita among others while the genus Schlegelella (Caldimonas) and Bosea were primarily found in larger juveniles. …”
Get full text

New insights into the stipitate hydnoid fungi Sarcodon, Hydnellum, and the formerly informally defined Neosarcodon, with emphasis on the edible species marketed in Southwest China by Di Wang, Hui Feng, Jie Zhou, Tian-Hai Liu, Zhi-Yuan Zhang, Ying-Yin Xu, Jie Tang, Wei-Hong Peng, Xiao-Lan He

“…In the present molecular analyses, four distinct clades were recovered and strongly supported: Hydnellum, Neosarcodon, Phellodon and Sarcodon. …”
Get full text

Genome variability of domestic tomato varieties: data from AFLP analysis by A. V. Kulakova, E. A. Dyachenko, A. V. Shchennikova, O. N. Pyshnaya, E. A. Dzhos

“…Analysis of the amplification spectra placed wild tomato accessions into separate clades. Sister clades included cultivars of FSCV breeding resistant to drought and/or cold and, in part, to late blight, Alternaria, Septoria, tobacco mosaic virus and blossom end rot, as well as tomato accessions not characterized according to these traits, which suggests that they have resistance to stress factors. …”
Get full text

Integrating phylogeographic and phenotypic evidence to delimit deep evolutionary lineages in the Dryophytes japonicus species complex, with an assessment of their conservation need... by Amaël Borzée, Yikweon Jang, Siti N. Othman, Jordy Groffen, Irina V. Maslova, Zoljargal Purevdorj, Kiyomi Yasumiba, Tomohiko Shimada, Yoonjung Yi, Natalya Alekseevna Schepina, Desiree Andersen, Yoonhyuk Bae, Ikuo Miura, Christophe Dufresnes

“…Earlier studies on the northeast Asian treefrog, Dryophytes japonicus, identified a deep Mio-Pliocene diversification; however, phenotypic assessments were lacking, and the taxonomic identity of the identified clades is under debate. In this study, we assessed the genetic, genomic, morphological, and acoustic diversity and differentiation within the D. japonicus complex to propose taxonomic arrangements and assess taxon-specific threats for each defined clade. …”
Get full text

Comparative analysis of genetic polymorphism in <i>Rhaponticum carthamoides</i> (Asteraceae) populations by ISSR markers in the Altai Republic by E. V. Zhmud, I. N. Kuban, A. A. Achimova, M. B. Yamtyrov, O. V. Dorogina

“…The analysis showed that individual plants from five cenopopulations (CP) were distributed into three groups of similarity on the dendrogram. A separate clade was formed by plant samples from two CPs of the Katun Nature Reserve (KNR). …”
Get full text

<i>Phytophthora</i> Species and Their Associations with Chaparral and Oak Woodland Vegetation in Southern California by Sebastian N. Fajardo, Tyler B. Bourret, Susan J. Frankel, David M. Rizzo

“…<i>cadmea</i> (subclade 7a), <i>P</i>. taxon ‘oakpath’ (subclade 8e, first reported in this study), and several clade-6 species, including <i>P. crassamura</i>. …”
Get full text

Draft genome sequences of five Calonectria species from Eucalyptus plantations in China, Celoporthe dispersa, Sporothrix phasma and Alectoria sarmentosa by Feifei Liu, Shuaifei Chen, Maria A. Ferreira, Runlei Chang, Mohammad Sayari, Aquillah M. Kanzi, Brenda D. Wingfield, Michael J. Wingfield, David Pizarro, Ana Crespo, Pradeep K. Divakar, Z. Wilhelm de Beer, Tuan A. Duong

“…Alectoria sarmentosa is fruticose lichen belongs to the alectorioid clade of the family Parmeliaceae. The availability of these genome sequences will facilitate future studies on the systematics, population genetics, and genomics of these fungi.…”
Get full text

Avian influenza overview September–December 2024 by European Food Safety Authority, European Centre for Disease Prevention and Control, European Union Reference Laboratory for Avian Influenza, Leonidas Alexakis, Hubert Buczkowski, Mariette Ducatez, Alice Fusaro, Jose L. Gonzales, Thijs Kuiken, Karl Ståhl, Christoph Staubach, Olov Svartström, Calogero Terregino, Katriina Willgert, Miguel Melo, Lisa Kohnle

“…The risk of infection with currently circulating avian A(H5) influenza viruses of clade 2.3.4.4b in Europe remains low for the general public in the European Union/European Economic Area (EU/EEA). …”
Get full text

Biogeographic Insights Into the Late Miocene Diversification of the Giant Deep‐Ocean Amphipod Eurythenes by Carolina E. González, Johanna N. J. Weston, Reinaldo Rivera, Marcelo Oliva, Rubén Escribano, Osvaldo Ulloa

“…The resulting phylogenetic tree reveals a diverse clade, with a common ancestor originating around 11.81 Ma. …”
Get full text

A novel approach to analyzing the evolution of SARS-CoV-2 based on visualization and clustering of large genetic data compactly represented in operative memory by A. Yu. Palyanov, N. V. Palyanova

“…It is in good correspondence with phylogenetic trees (usually based on 3–4 thousand of genome variant representatives), but is built over millions of genomes, shows more details and is independent of the type of lineage/clade classification.…”
Get full text

Writers, readers, and erasers of N6-Methyladenosine (m6A) methylomes in oilseed rape: identification, molecular evolution, and expression profiling by Chaofan Shan, Kui Dong, Dongyu Wen, Ziyi Ye, Fei Hu, Meryem Zekraoui, Jun Cao

“…A phylogenetic analysis revealed that they could be further divided into four, three, and two clades, respectively. The distribution of protein motifs and gene structures among members of the same clade exhibited notable similarity. …”
Get full text