scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq by E. Ravza Gur, Jim R. Hughes

Subjects: “…Bulk ATAC-seq…”
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Chromatin accessibility reveals potential prognostic value of the peak set associated with smoking history in patients with lung adenocarcinoma by Han Liang, Jianlian Deng, Tian Luo, Huijuan Luo, Fuqiang Li, Kui Wu, Cong Lin

Subjects: “…ATAC-Seq…”
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Multiomics analyses of the effects of LED white light on the ripening of apricot fruits by Chunmei Bai, Yanyan Zheng, Christopher Brian Watkins, Lili Ma, Yuanye Jiang, Shaoqing Chen, Hongwei Wang, Xuelian He, Lichun Han, Xinyuan Zhou, Qing Wang, Caie Wu, Jinhua Zuo

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Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation by Brandi Atteberry, Benjamin P. Berman, Benjamin P. Berman, Theresa K. Kelly, Justin Cayford

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PDX models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia by Paulina Richter‐Pechańska, Joachim B Kunz, Beat Bornhauser, Caroline von Knebel Doeberitz, Tobias Rausch, Büşra Erarslan‐Uysal, Yassen Assenov, Viktoras Frismantas, Blerim Marovca, Sebastian M Waszak, Martin Zimmermann, Julia Seemann, Margit Happich, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner‐Schwabe, Cornelia Eckert, Martina U Muckenthaler, Jan O Korbel, Jean‐Pierre Bourquin, Andreas E Kulozik

Subjects: “…ATAC‐Seq…”
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Chromatin accessibility landscape of pediatric T‐lymphoblastic leukemia and human T‐cell precursors by Büşra Erarslan‐Uysal, Joachim B Kunz, Tobias Rausch, Paulina Richter‐Pechańska, Ianthe AEM van Belzen, Viktoras Frismantas, Beat Bornhauser, Diana Ordoñez‐Rueada, Malte Paulsen, Vladimir Benes, Martin Stanulla, Martin Schrappe, Gunnar Cario, Gabriele Escherich, Kseniya Bakharevich, Renate Kirschner‐Schwabe, Cornelia Eckert, Tsvetomir Loukanov, Matthias Gorenflo, Sebastian M Waszak, Jean‐Pierre Bourquin, Martina U Muckenthaler, Jan O Korbel, Andreas E Kulozik

Subjects: “…ATAC‐Seq…”
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Identify key transcript factors of adipocyte differentiation in abdominal fat of broilers based on ATAC-seq and RNA-seq by Xiaoying Liu, Chaohui Wang, Xi Sun, Zhihao Qiao, Xiaojun Yang, Yanli Liu

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Echinocandin Adaptation in <i>Candida albicans</i> Is Accompanied by Altered Chromatin Accessibility at Gene Promoters and by Cell Wall Remodeling by Sudisht K. Sah, Anshuman Yadav, Tyler Stahl, Jeffrey J. Hayes, Michael Bulger, Elena Rustchenko

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IGN: Invariable gene set-based normalization for chromatin accessibility profile data analysis by Shengen Shawn Hu, Hai-Hui Xue, Chongzhi Zang

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Integration of ATAC-seq and RNA-seq reveals signal regulation during post-molt and inter-molt stages in muscle of Eriocheir sinensis by Bin Wang, Bin Wang, Jingjing Li, Mingzhi Zhang, Mingzhi Zhang, Anqi Li, Zhentao Song, Zhentao Song, Zhen He, Zhen He, Ruiqi Zhang, Ruiqi Zhang, Tong Hao, Tong Hao, Jinsheng Sun, Jinsheng Sun

Subjects: “…ATAC-seq…”
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Combining ATAC-seq and RNA-seq reveals key genes for gonadal abnormalities in one-month-old XX-DSD pigs by Congying Yu, Bingzhou Zhong, Yuqiao Zhang, Haiquan Zhao, Jinhua Wu, Haiyi Yu, Hui Yu, Hua Li

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Integrative RNA-seq and ATAC-seq analysis unveils antioxidant defense mechanisms in salt-tolerant rice variety Pokkali by Qiaoyu Yang, Yutong Zheng, Xitao Li

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Chromatin changes associated with neutrophil extracellular trap formation in whole blood reflect complex immune signaling by Justin Cayford, Brandi Atteberry, Akanksha Singh-Taylor, Andrew Retter, Andrew Retter, Andrew Retter, Benjamin P. Berman, Benjamin P. Berman, Theresa K. Kelly

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Integrated ATAC‐seq and RNA‐seq analysis identifies key regulatory elements in NK cells activated with feeder cells and IL‐2 by Pedram Motallebnejad, Zion Lee, Jennifer L. One, Frank Cichocki, Wei‐Shou Hu, Samira M. Azarin

Subjects: “…ATAC‐seq…”
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Bridging epigenomics and tumor immunometabolism: molecular mechanisms and therapeutic implications by Xiaowen Xie, Weici Liu, Zhiyuan Yuan, Hanqing Chen, Wenjun Mao

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Uncovering Molecular Mechanisms of Feed Efficiency in Pigs Through Multi-Omics Analysis of the Jejunum by Saixian Zhang, Yue Xiang, Yaobang Jian, Qiulin Zhao, Jiahui Sun, Yi Huang, Jing Xu, Xiaolong Qi, Jingjin Li, Zhuqing Zheng, Liangliang Fu, Yuwen Liu, Xinyun Li

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CEBPD regulates CD47 and MAP4K4 via chromatin accessibility in canine mammary tumor monocytes by Jeong-Woon Lee, Dabin Lee, Kyung-Ju Shin, Keun Hong Son, Je-Yoel Cho

Subjects: “…ATAC-seq…”
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Single-cell chromatin accessibility profiling reveals regulatory mechanisms and evolution in pig brains by Yue Xiang, Saixian Zhang, Yi Huang, Zhuqing Zheng, Jiahui Sun, Qiulin Zhao, Peng Zhou, Xiaolong Qi, Jingjin Li, Fuyang Xiong, Jing Xu, Shengquan Wang, Liangliang Fu, Xinyun Li

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HBV-driven host chromatin accessibility changes affect liver metabolic pathways, iron homeostasis and promote a preneoplastic phenotype by Vincenzo Alfano, Giuseppe Rubens Pascucci, Giacomo Corleone, Massimiliano Cocca, Francesca De Nicola, Océane Floriot, Alexia Paturel, Francesca Casuscelli Di Tocco, Claude Caron de Fromentel, Philippe Merle, Michel Rivoire, Massimo Levrero, Francesca Guerrieri

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Multi-omics integration identifies NK cell-mediated cytotoxicity as a therapeutic target in systemic lupus erythematosus by Jingjing Zhang, Ling Ma, Hanyin Deng, Wenqian Yi, Alim Tohtihan, Xiaojun Tang, Xiudi Wu, Xuebing Feng

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