HapNetworkView: a tool for haplotype network exploration and visualization
Abstract Background Haplotype networks are useful for investigating the genealogical relationships among haplotypes and have been extensively used in molecular evolution and population genetic studies. However, existing tools for visualizing haplotype networks lack comprehensive functionalities for...
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| Format: | Article |
| Language: | English |
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BMC
2025-01-01
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| Series: | BMC Genomics |
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| Online Access: | https://doi.org/10.1186/s12864-025-11206-8 |
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| author | Lianjiang Chi Yi Dong Ruizhen Wang Suiyuan Yang Lan Wu Yongbiao Xue Hua Chen |
| author_facet | Lianjiang Chi Yi Dong Ruizhen Wang Suiyuan Yang Lan Wu Yongbiao Xue Hua Chen |
| author_sort | Lianjiang Chi |
| collection | DOAJ |
| description | Abstract Background Haplotype networks are useful for investigating the genealogical relationships among haplotypes and have been extensively used in molecular evolution and population genetic studies. However, existing tools for visualizing haplotype networks lack comprehensive functionalities for data exploration and layout adjustments. Therefore, there is a need for a useful tool capable of constructing and visualizing haplotype networks, facilitating the exploration of data, particularly with datasets with large sample sizes. Results We present HapNetworkView, a user-friendly tool that facilitates the construction and interactive visualization of haplotype networks, enabling users to explore haplotypes and mutation information effectively. HapNetworkView offers both automatic optimization and manual adjustment for haplotype network layouts. Additionally, HapNetworkView supports various input and output formats, as well as color customization. Conclusions These comprehensive functionalities collectively satisfy various needs of users in haplotype network analysis, making HapNetworkView a valuable tool. |
| format | Article |
| id | doaj-art-fce8545830d749bf85f98781cbf4640e |
| institution | Kabale University |
| issn | 1471-2164 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomics |
| spelling | doaj-art-fce8545830d749bf85f98781cbf4640e2025-01-26T12:16:36ZengBMCBMC Genomics1471-21642025-01-012611610.1186/s12864-025-11206-8HapNetworkView: a tool for haplotype network exploration and visualizationLianjiang Chi0Yi Dong1Ruizhen Wang2Suiyuan Yang3Lan Wu4Yongbiao Xue5Hua Chen6Beijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationBeijing Institute of Genomics, Chinese Academy of Sciences and China National Center for BioinformationAbstract Background Haplotype networks are useful for investigating the genealogical relationships among haplotypes and have been extensively used in molecular evolution and population genetic studies. However, existing tools for visualizing haplotype networks lack comprehensive functionalities for data exploration and layout adjustments. Therefore, there is a need for a useful tool capable of constructing and visualizing haplotype networks, facilitating the exploration of data, particularly with datasets with large sample sizes. Results We present HapNetworkView, a user-friendly tool that facilitates the construction and interactive visualization of haplotype networks, enabling users to explore haplotypes and mutation information effectively. HapNetworkView offers both automatic optimization and manual adjustment for haplotype network layouts. Additionally, HapNetworkView supports various input and output formats, as well as color customization. Conclusions These comprehensive functionalities collectively satisfy various needs of users in haplotype network analysis, making HapNetworkView a valuable tool.https://doi.org/10.1186/s12864-025-11206-8Haplotype networkVisualizationExplorationPopulation genetics |
| spellingShingle | Lianjiang Chi Yi Dong Ruizhen Wang Suiyuan Yang Lan Wu Yongbiao Xue Hua Chen HapNetworkView: a tool for haplotype network exploration and visualization BMC Genomics Haplotype network Visualization Exploration Population genetics |
| title | HapNetworkView: a tool for haplotype network exploration and visualization |
| title_full | HapNetworkView: a tool for haplotype network exploration and visualization |
| title_fullStr | HapNetworkView: a tool for haplotype network exploration and visualization |
| title_full_unstemmed | HapNetworkView: a tool for haplotype network exploration and visualization |
| title_short | HapNetworkView: a tool for haplotype network exploration and visualization |
| title_sort | hapnetworkview a tool for haplotype network exploration and visualization |
| topic | Haplotype network Visualization Exploration Population genetics |
| url | https://doi.org/10.1186/s12864-025-11206-8 |
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