Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI
Trichoderma yunnanense strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia. It exhibits significant potential as a plant growth promoter and biocontrol agent in rice plants. Although this strain has sho...
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Elsevier
2025-02-01
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| author | Dedat Prismantoro Kah-Ooi Chua Kelly Wan-Ee Teo Rosamond Chan Thomas Argyarich Jefferson Nurul Shamsinah Mohd Suhaimi Muhamad Shakirin Mispan Mia Miranti Febri Doni |
| author_facet | Dedat Prismantoro Kah-Ooi Chua Kelly Wan-Ee Teo Rosamond Chan Thomas Argyarich Jefferson Nurul Shamsinah Mohd Suhaimi Muhamad Shakirin Mispan Mia Miranti Febri Doni |
| author_sort | Dedat Prismantoro |
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| description | Trichoderma yunnanense strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia. It exhibits significant potential as a plant growth promoter and biocontrol agent in rice plants. Although this strain has shown promise in promoting plant growth and suppressing phytopathogens under in vitro and in planta conditions, there is still a lack of genomic data to elucidate the molecular mechanisms underlying its plant growth-promoting and biocontrol capabilities. This study reports the whole genome sequence of T. yunnanense strain TM10. The genome of the fungus was sequenced using the MGI DNBSEQ-G400 high-throughput sequencing platform. The assembled genome of T. yunnanense strain TM10 was approximately 36 Mbp in length, comprising 385 contigs with a GC content of 48 % and a sequencing coverage of 43.8×. This genomic data provides a foundation for harnessing the plant growth-promoting and biocontrol potential of this strain. The complete genome sequence has been deposited at the National Center for Biotechnology Information (NCBI) under Bioproject accession number PRJNA1181959, BioSample ID SAMN44575400, and genome accession number JBIYZQ000000000. These data are valuable for further research into the biotechnological potential of this strain and for exploring the molecular mechanisms underlying its plant growth-promoting and biocontrol activities. |
| format | Article |
| id | doaj-art-f14ec741e9f047b796f7d6156eff2b9e |
| institution | Kabale University |
| issn | 2352-3409 |
| language | English |
| publishDate | 2025-02-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj-art-f14ec741e9f047b796f7d6156eff2b9e2025-01-31T05:11:48ZengElsevierData in Brief2352-34092025-02-0158111283Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBIDedat Prismantoro0Kah-Ooi Chua1Kelly Wan-Ee Teo2Rosamond Chan3Thomas Argyarich Jefferson4Nurul Shamsinah Mohd Suhaimi5Muhamad Shakirin Mispan6Mia Miranti7Febri Doni8Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, IndonesiaCentre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, Kuala Lumpur 50603, Malaysia; Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, MalaysiaCentre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, Kuala Lumpur 50603, MalaysiaDepartment of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, IndonesiaDepartment of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, IndonesiaCentre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, Kuala Lumpur 50603, Malaysia; Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, MalaysiaInstitute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia; Glami Lemi Biotechnology Research Center, Universiti Malaya, Kuala Klawang, Negeri Sembilan 71650, MalaysiaDepartment of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, IndonesiaDepartment of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, Indonesia; Corresponding author.Trichoderma yunnanense strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia. It exhibits significant potential as a plant growth promoter and biocontrol agent in rice plants. Although this strain has shown promise in promoting plant growth and suppressing phytopathogens under in vitro and in planta conditions, there is still a lack of genomic data to elucidate the molecular mechanisms underlying its plant growth-promoting and biocontrol capabilities. This study reports the whole genome sequence of T. yunnanense strain TM10. The genome of the fungus was sequenced using the MGI DNBSEQ-G400 high-throughput sequencing platform. The assembled genome of T. yunnanense strain TM10 was approximately 36 Mbp in length, comprising 385 contigs with a GC content of 48 % and a sequencing coverage of 43.8×. This genomic data provides a foundation for harnessing the plant growth-promoting and biocontrol potential of this strain. The complete genome sequence has been deposited at the National Center for Biotechnology Information (NCBI) under Bioproject accession number PRJNA1181959, BioSample ID SAMN44575400, and genome accession number JBIYZQ000000000. These data are valuable for further research into the biotechnological potential of this strain and for exploring the molecular mechanisms underlying its plant growth-promoting and biocontrol activities.http://www.sciencedirect.com/science/article/pii/S2352340925000150Genome annotationMGI sequencing platformRiceTrichoderma yunnanenseWhole genome sequencing |
| spellingShingle | Dedat Prismantoro Kah-Ooi Chua Kelly Wan-Ee Teo Rosamond Chan Thomas Argyarich Jefferson Nurul Shamsinah Mohd Suhaimi Muhamad Shakirin Mispan Mia Miranti Febri Doni Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI Data in Brief Genome annotation MGI sequencing platform Rice Trichoderma yunnanense Whole genome sequencing |
| title | Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI |
| title_full | Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI |
| title_fullStr | Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI |
| title_full_unstemmed | Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI |
| title_short | Whole genome sequence data of Trichoderma yunnanense strain TM10, a plant growth-promoting fungus and biocontrol agentNCBI |
| title_sort | whole genome sequence data of trichoderma yunnanense strain tm10 a plant growth promoting fungus and biocontrol agentncbi |
| topic | Genome annotation MGI sequencing platform Rice Trichoderma yunnanense Whole genome sequencing |
| url | http://www.sciencedirect.com/science/article/pii/S2352340925000150 |
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