Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples
Since viruses are obligate intracellular pathogens, sequencing their genomes results in metagenomic data from both the virus and the host. Virology researchers are constantly seeking new, cost-effective strategies and bioinformatic pipelines for the retrieval of complete viral genomes from these met...
Saved in:
| Main Authors: | Sonsiray Álvarez-Narváez, Telvin L. Harrell, Islam Nour, Sujit K. Mohanty, Steven J. Conrad |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Frontiers Media S.A.
2025-02-01
|
| Series: | Frontiers in Bioinformatics |
| Subjects: | |
| Online Access: | https://www.frontiersin.org/articles/10.3389/fbinf.2025.1498921/full |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
-
Novel strand-specific qPCR assay elucidates differences in viral replication kinetics between different strains of avian reovirus
by: Telvin L. Harrell, et al.
Published: (2025-06-01) -
Characterization and pathogenicity of a novel avian orthoreovirus in China
by: Shunyan Chen, et al.
Published: (2025-01-01) -
Genetics and biological characteristics of duck reoviruses isolated from ducks and geese in China
by: Xiaohong Sun, et al.
Published: (2025-02-01) -
On the ability to extract MLVA profiles of Vibrio cholerae isolates from WGS data generated with Oxford Nanopore Technologies
by: Jérôme Ambroise, et al.
Published: (2025-01-01) -
Benchmarking of bioinformatics tools for the hybrid de novo assembly of human and non-human whole-genome sequencing data
by: Adrián Muñoz-Barrera, et al.
Published: (2025-01-01)