Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria

Abstract The escalating antibiotic resistance crisis poses a major global health threat. Bacteriophage therapy offers a promising alternative for combating multidrug‐resistant infections. However, bacterial resistance to phages remains a significant hurdle. Innovative strategies are needed to overco...

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Main Authors: Yongqi Mu, Yuqin Song, Xueru Tian, Zixuan Ding, Shigang Yao, Yi Li, Chao Wang, Dawei Wei, Waldemar Vollmer, Gang Zhang, Jie Feng
Format: Article
Language:English
Published: Wiley 2025-04-01
Series:mLife
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Online Access:https://doi.org/10.1002/mlf2.70003
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author Yongqi Mu
Yuqin Song
Xueru Tian
Zixuan Ding
Shigang Yao
Yi Li
Chao Wang
Dawei Wei
Waldemar Vollmer
Gang Zhang
Jie Feng
author_facet Yongqi Mu
Yuqin Song
Xueru Tian
Zixuan Ding
Shigang Yao
Yi Li
Chao Wang
Dawei Wei
Waldemar Vollmer
Gang Zhang
Jie Feng
author_sort Yongqi Mu
collection DOAJ
description Abstract The escalating antibiotic resistance crisis poses a major global health threat. Bacteriophage therapy offers a promising alternative for combating multidrug‐resistant infections. However, bacterial resistance to phages remains a significant hurdle. Innovative strategies are needed to overcome this challenge. In this study, we developed a phage cocktail based on our phage library, consisting of three phages that suppressed phage resistance of carbapenem‐resistant hypervirulent Klebsiella pneumoniae (CR‐hvKp). This cocktail capitalized on dual instances of collateral sensitivity, thereby constraining the evolution of phage resistance. The first‐layered collateral sensitivity arose from overlapping coverage between capsular polysaccharide (CPS) and lipopolysaccharide (LPS), rendering the bacteria resistant to CPS‐binding phages but more susceptible to LPS‐binding phages. The second‐layered collateral sensitivity resulted from an O serotype switch (from O1 to O2), causing resistance to O1 antigen‐binding phages but increasing susceptibility to phages that target the O2 antigen. This dual‐layered collateral sensitivity phage cocktail effectively mitigated infection caused by CR‐hvKp in mice. Our research highlights the importance of the collateral sensitivity mechanism in counteracting the evolution of phage resistance and offers a sophisticated strategy for configuring phage cocktails to eliminate bacterial resistance.
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spelling doaj-art-e2f8aebe3bd54bf4b73a797ae1c6742e2025-08-20T03:53:39ZengWileymLife2770-100X2025-04-014214315410.1002/mlf2.70003Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteriaYongqi Mu0Yuqin Song1Xueru Tian2Zixuan Ding3Shigang Yao4Yi Li5Chao Wang6Dawei Wei7Waldemar Vollmer8Gang Zhang9Jie Feng10State Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaInstitute for Molecular Bioscience The University of Queensland Brisbane Queensland AustraliaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaState Key Laboratory of Microbial Resources, Institute of Microbiology Chinese Academy of Sciences Beijing ChinaAbstract The escalating antibiotic resistance crisis poses a major global health threat. Bacteriophage therapy offers a promising alternative for combating multidrug‐resistant infections. However, bacterial resistance to phages remains a significant hurdle. Innovative strategies are needed to overcome this challenge. In this study, we developed a phage cocktail based on our phage library, consisting of three phages that suppressed phage resistance of carbapenem‐resistant hypervirulent Klebsiella pneumoniae (CR‐hvKp). This cocktail capitalized on dual instances of collateral sensitivity, thereby constraining the evolution of phage resistance. The first‐layered collateral sensitivity arose from overlapping coverage between capsular polysaccharide (CPS) and lipopolysaccharide (LPS), rendering the bacteria resistant to CPS‐binding phages but more susceptible to LPS‐binding phages. The second‐layered collateral sensitivity resulted from an O serotype switch (from O1 to O2), causing resistance to O1 antigen‐binding phages but increasing susceptibility to phages that target the O2 antigen. This dual‐layered collateral sensitivity phage cocktail effectively mitigated infection caused by CR‐hvKp in mice. Our research highlights the importance of the collateral sensitivity mechanism in counteracting the evolution of phage resistance and offers a sophisticated strategy for configuring phage cocktails to eliminate bacterial resistance.https://doi.org/10.1002/mlf2.70003antibiotic resistancebacteriophage (phage) cocktailscollateral sensitivityevolutionKlebsiella pneumoniae
spellingShingle Yongqi Mu
Yuqin Song
Xueru Tian
Zixuan Ding
Shigang Yao
Yi Li
Chao Wang
Dawei Wei
Waldemar Vollmer
Gang Zhang
Jie Feng
Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
mLife
antibiotic resistance
bacteriophage (phage) cocktails
collateral sensitivity
evolution
Klebsiella pneumoniae
title Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
title_full Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
title_fullStr Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
title_full_unstemmed Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
title_short Leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
title_sort leveraging collateral sensitivity to counteract the evolution of bacteriophage resistance in bacteria
topic antibiotic resistance
bacteriophage (phage) cocktails
collateral sensitivity
evolution
Klebsiella pneumoniae
url https://doi.org/10.1002/mlf2.70003
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