Chromosome-level genome assemblies of Verpa bohemica and Verpa conica
Abstract Verpa, commonly known as “early morel” or “false morel”, plays an important ecological role and offers considerable economic and medicinal potential. Despite their significance, research on Verpa species, particularly V. bohemica and V. conica, remains limited. In this study, we assembled h...
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Nature Portfolio
2025-05-01
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| Online Access: | https://doi.org/10.1038/s41597-025-05224-0 |
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| author | Zhuyue Yan Xiaofei Shi Yingli Cai Wenhua Sun Peixin He Liyuan Wu Jin Zhang Xing Guo Bo Wang Fuqiang Yu Wei Liu |
| author_facet | Zhuyue Yan Xiaofei Shi Yingli Cai Wenhua Sun Peixin He Liyuan Wu Jin Zhang Xing Guo Bo Wang Fuqiang Yu Wei Liu |
| author_sort | Zhuyue Yan |
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| description | Abstract Verpa, commonly known as “early morel” or “false morel”, plays an important ecological role and offers considerable economic and medicinal potential. Despite their significance, research on Verpa species, particularly V. bohemica and V. conica, remains limited. In this study, we assembled high-quality sub-chromosomal genomes of six Verpa strains using Nanopore and Illumina sequencing, with average sizes of 44.38 Mb for V. bohemica and 45.40 Mb for V. conica. Specifically, the assemblies of V. bohemica strain 21108 and V. conica strain 21120 were anchored to 26 and 25 chromosomes with Hi-C technologies, respectively. The consensus quality value (QV) of both V. bohemica and V. conica exceeded 40. In addition, an average of 11,024 and 11,052 protein-coding genes were identified for V. bohemica and V. conica, respectively, with BUSCO completeness scores ranging from 98.71% to 99.24%. Overall, these reported genomes will provide valuable genomic resources for the evolution and ecological roles research of Verpa. |
| format | Article |
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| issn | 2052-4463 |
| language | English |
| publishDate | 2025-05-01 |
| publisher | Nature Portfolio |
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| spelling | doaj-art-dbadbfd09c6f4a39baadd4229c3524c72025-08-20T02:00:06ZengNature PortfolioScientific Data2052-44632025-05-011211810.1038/s41597-025-05224-0Chromosome-level genome assemblies of Verpa bohemica and Verpa conicaZhuyue Yan0Xiaofei Shi1Yingli Cai2Wenhua Sun3Peixin He4Liyuan Wu5Jin Zhang6Xing Guo7Bo Wang8Fuqiang Yu9Wei Liu10The Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesThe Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesKey Laboratory of Chemistry in Ethnic Medicinal Resources, School of Ethnic Medicine, Yunnan Minzu University KunmingCollege of Food and Biological Engineering, Zhengzhou University of Light IndustryCollege of Food and Biological Engineering, Zhengzhou University of Light IndustryThe Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesThe Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesYichun Branch of Heilongjiang Academy of Forestry SciencesGansu Province Xiaolong mountains forestry protect center’s Dangchuan forest farmThe Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesThe Germplasm Bank of Wild Species & Yunnan Key Laboratory for Fungal Diversity and Green Development, Kunming Institute of Botany, Chinese Academy of SciencesAbstract Verpa, commonly known as “early morel” or “false morel”, plays an important ecological role and offers considerable economic and medicinal potential. Despite their significance, research on Verpa species, particularly V. bohemica and V. conica, remains limited. In this study, we assembled high-quality sub-chromosomal genomes of six Verpa strains using Nanopore and Illumina sequencing, with average sizes of 44.38 Mb for V. bohemica and 45.40 Mb for V. conica. Specifically, the assemblies of V. bohemica strain 21108 and V. conica strain 21120 were anchored to 26 and 25 chromosomes with Hi-C technologies, respectively. The consensus quality value (QV) of both V. bohemica and V. conica exceeded 40. In addition, an average of 11,024 and 11,052 protein-coding genes were identified for V. bohemica and V. conica, respectively, with BUSCO completeness scores ranging from 98.71% to 99.24%. Overall, these reported genomes will provide valuable genomic resources for the evolution and ecological roles research of Verpa.https://doi.org/10.1038/s41597-025-05224-0 |
| spellingShingle | Zhuyue Yan Xiaofei Shi Yingli Cai Wenhua Sun Peixin He Liyuan Wu Jin Zhang Xing Guo Bo Wang Fuqiang Yu Wei Liu Chromosome-level genome assemblies of Verpa bohemica and Verpa conica Scientific Data |
| title | Chromosome-level genome assemblies of Verpa bohemica and Verpa conica |
| title_full | Chromosome-level genome assemblies of Verpa bohemica and Verpa conica |
| title_fullStr | Chromosome-level genome assemblies of Verpa bohemica and Verpa conica |
| title_full_unstemmed | Chromosome-level genome assemblies of Verpa bohemica and Verpa conica |
| title_short | Chromosome-level genome assemblies of Verpa bohemica and Verpa conica |
| title_sort | chromosome level genome assemblies of verpa bohemica and verpa conica |
| url | https://doi.org/10.1038/s41597-025-05224-0 |
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