QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE
In order to develop quantitative structure-activity relationship (QSAR), for predicting antiulcer activity of hydroxamic acid analogues use as dataset and their antiulcer activity were obtained from the literature. Density Functional Theory (DFT) using B3LYP/6-31G* quantum chemical calculation meth...
Saved in:
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Universidade Federal de Viçosa (UFV)
2019-12-01
|
| Series: | The Journal of Engineering and Exact Sciences |
| Subjects: | |
| Online Access: | https://periodicos.ufv.br/jcec/article/view/8751 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| _version_ | 1832569694657183744 |
|---|---|
| author | Ibrahim Tijjani Ibrahim Adamu Uzairu Balarabe Sagagi |
| author_facet | Ibrahim Tijjani Ibrahim Adamu Uzairu Balarabe Sagagi |
| author_sort | Ibrahim Tijjani Ibrahim |
| collection | DOAJ |
| description |
In order to develop quantitative structure-activity relationship (QSAR), for predicting antiulcer activity of hydroxamic acid analogues use as dataset and their antiulcer activity were obtained from the literature. Density Functional Theory (DFT) using B3LYP/6-31G* quantum chemical calculation method was used to find the optimized geometry of the studied compounds. Eight types of molecular descriptors were used to find out the relation between antipeptic ulcer (APU) activity and structural properties. Relevant molecular descriptors were selected by Genetic Function Algorithms (GFA). The best model obtained was given a distinct validated, good and robust statistical parameters which include; square correlation coefficient R2 value of (0.9989), adjusted determination coefficient, R2adj value of (0.9984), Leave one out cross validation determination coefficient Q2 value of (0.9948) and external validation as predicted determination coefficient R2 value of(0.8409). Molecular docking analysis find out that, the best lead-compound with the higher negative value score of (-8.5 kcal/mol) were formed hydrophobic interaction and H-bonding with amino acid residue between the inhibitors compounds with their respective receptor.
|
| format | Article |
| id | doaj-art-d71405aa8a9b4eceab54674531ce87bf |
| institution | Kabale University |
| issn | 2527-1075 |
| language | English |
| publishDate | 2019-12-01 |
| publisher | Universidade Federal de Viçosa (UFV) |
| record_format | Article |
| series | The Journal of Engineering and Exact Sciences |
| spelling | doaj-art-d71405aa8a9b4eceab54674531ce87bf2025-02-02T19:58:36ZengUniversidade Federal de Viçosa (UFV)The Journal of Engineering and Exact Sciences2527-10752019-12-015510.18540/jcecvl5iss5pp0482-0493QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASEIbrahim Tijjani Ibrahim0Adamu Uzairu1Balarabe Sagagi2Department of Chemistry, Kano University of Science and Technology, Wudil Kano, NigeriaDepartment of Chemistry, Ahmadu Bello University Zaria, Kaduna, NigeriaDepartment of Chemistry, Kano University of Science and Technology, Wudil Kano, Nigeria In order to develop quantitative structure-activity relationship (QSAR), for predicting antiulcer activity of hydroxamic acid analogues use as dataset and their antiulcer activity were obtained from the literature. Density Functional Theory (DFT) using B3LYP/6-31G* quantum chemical calculation method was used to find the optimized geometry of the studied compounds. Eight types of molecular descriptors were used to find out the relation between antipeptic ulcer (APU) activity and structural properties. Relevant molecular descriptors were selected by Genetic Function Algorithms (GFA). The best model obtained was given a distinct validated, good and robust statistical parameters which include; square correlation coefficient R2 value of (0.9989), adjusted determination coefficient, R2adj value of (0.9984), Leave one out cross validation determination coefficient Q2 value of (0.9948) and external validation as predicted determination coefficient R2 value of(0.8409). Molecular docking analysis find out that, the best lead-compound with the higher negative value score of (-8.5 kcal/mol) were formed hydrophobic interaction and H-bonding with amino acid residue between the inhibitors compounds with their respective receptor. https://periodicos.ufv.br/jcec/article/view/8751QSARMolecular DockingDFT, GFAUlcer1E9Y hydrolase |
| spellingShingle | Ibrahim Tijjani Ibrahim Adamu Uzairu Balarabe Sagagi QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE The Journal of Engineering and Exact Sciences QSAR Molecular Docking DFT, GFA Ulcer 1E9Y hydrolase |
| title | QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE |
| title_full | QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE |
| title_fullStr | QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE |
| title_full_unstemmed | QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE |
| title_short | QUANTITATIVE STRUCTURE-ACTIVITY RELATIONSHIP AND MOLECULAR DOCKING STUDIES OF HYDROXAMIC ACID DERIVATIVES AS NOVEL CLASS INHIBITORS AGAINST HELICOBACTER PYLORI UREASE |
| title_sort | quantitative structure activity relationship and molecular docking studies of hydroxamic acid derivatives as novel class inhibitors against helicobacter pylori urease |
| topic | QSAR Molecular Docking DFT, GFA Ulcer 1E9Y hydrolase |
| url | https://periodicos.ufv.br/jcec/article/view/8751 |
| work_keys_str_mv | AT ibrahimtijjaniibrahim quantitativestructureactivityrelationshipandmoleculardockingstudiesofhydroxamicacidderivativesasnovelclassinhibitorsagainsthelicobacterpyloriurease AT adamuuzairu quantitativestructureactivityrelationshipandmoleculardockingstudiesofhydroxamicacidderivativesasnovelclassinhibitorsagainsthelicobacterpyloriurease AT balarabesagagi quantitativestructureactivityrelationshipandmoleculardockingstudiesofhydroxamicacidderivativesasnovelclassinhibitorsagainsthelicobacterpyloriurease |