QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data
We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and o...
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| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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BioMed Central
2012-12-01
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| Series: | Genomics & Informatics |
| Subjects: | |
| Online Access: | http://genominfo.org/upload/pdf/gni-10-263.pdf |
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| _version_ | 1832573792972439552 |
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| author | Nayoung Kim Herin Park Ningning He Hyeon Young Lee Sukjoon Yoon |
| author_facet | Nayoung Kim Herin Park Ningning He Hyeon Young Lee Sukjoon Yoon |
| author_sort | Nayoung Kim |
| collection | DOAJ |
| description | We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics. |
| format | Article |
| id | doaj-art-d68213c2c1cd4785a640c7d1ccf42b2e |
| institution | Kabale University |
| issn | 1598-866X 2234-0742 |
| language | English |
| publishDate | 2012-12-01 |
| publisher | BioMed Central |
| record_format | Article |
| series | Genomics & Informatics |
| spelling | doaj-art-d68213c2c1cd4785a640c7d1ccf42b2e2025-02-02T02:50:06ZengBioMed CentralGenomics & Informatics1598-866X2234-07422012-12-0110426326510.5808/GI.2012.10.4.26325QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics DataNayoung Kim0Herin Park1Ningning He2Hyeon Young Lee3Sukjoon Yoon4Department of Biological Sciences, Sookmyung Women's University, Seoul 140-742, Korea.Department of Biological Sciences, Sookmyung Women's University, Seoul 140-742, Korea.Department of Biological Sciences, Sookmyung Women's University, Seoul 140-742, Korea.Department of Biological Sciences, Sookmyung Women's University, Seoul 140-742, Korea.Department of Biological Sciences, Sookmyung Women's University, Seoul 140-742, Korea.We developed a user-friendly, interactive program to simultaneously cluster and visualize omics data, such as DNA and protein array profiles. This program provides diverse algorithms for the hierarchical clustering of two-dimensional data. The clustering results can be interactively visualized and optimized on a heatmap. The present tool does not require any prior knowledge of scripting languages to carry out the data clustering and visualization. Furthermore, the heatmaps allow the selective display of data points satisfying user-defined criteria. For example, a clustered heatmap of experimental values can be differentially visualized based on statistical values, such as p-values. Including diverse menu-based display options, QCanvas provides a convenient graphical user interface for pattern analysis and visualization with high-quality graphics.http://genominfo.org/upload/pdf/gni-10-263.pdfdata clusteringgenomicsheatmap visualizationmicroarray anlaysispattern recognition |
| spellingShingle | Nayoung Kim Herin Park Ningning He Hyeon Young Lee Sukjoon Yoon QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data Genomics & Informatics data clustering genomics heatmap visualization microarray anlaysis pattern recognition |
| title | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
| title_full | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
| title_fullStr | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
| title_full_unstemmed | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
| title_short | QCanvas: An Advanced Tool for Data Clustering and Visualization of Genomics Data |
| title_sort | qcanvas an advanced tool for data clustering and visualization of genomics data |
| topic | data clustering genomics heatmap visualization microarray anlaysis pattern recognition |
| url | http://genominfo.org/upload/pdf/gni-10-263.pdf |
| work_keys_str_mv | AT nayoungkim qcanvasanadvancedtoolfordataclusteringandvisualizationofgenomicsdata AT herinpark qcanvasanadvancedtoolfordataclusteringandvisualizationofgenomicsdata AT ningninghe qcanvasanadvancedtoolfordataclusteringandvisualizationofgenomicsdata AT hyeonyounglee qcanvasanadvancedtoolfordataclusteringandvisualizationofgenomicsdata AT sukjoonyoon qcanvasanadvancedtoolfordataclusteringandvisualizationofgenomicsdata |