Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis
Abstract Objectives Pseudomonas aeruginosa, a Gram-negative opportunistic pathogen, is frequently associated with multidrug resistance and global epidemic outbreaks, contributing significantly to morbidity and mortality in hospitalized patients. However, P. aeruginosa belonging to the sequence type...
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BMC
2025-01-01
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| Series: | BMC Genomic Data |
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| Online Access: | https://doi.org/10.1186/s12863-025-01298-2 |
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| author | Shuo Jiang Mengmin Ye Ke Liu Huiluo Cao Xiaoshan Lin |
| author_facet | Shuo Jiang Mengmin Ye Ke Liu Huiluo Cao Xiaoshan Lin |
| author_sort | Shuo Jiang |
| collection | DOAJ |
| description | Abstract Objectives Pseudomonas aeruginosa, a Gram-negative opportunistic pathogen, is frequently associated with multidrug resistance and global epidemic outbreaks, contributing significantly to morbidity and mortality in hospitalized patients. However, P. aeruginosa belonging to the sequence type (ST) 16 was rarely reported. Here, this report presents the complete genome sequence of YK01, a ST16 P. aeruginosa isolate from a patient with keratitis. The complete reference genome of P. aeruginosa YK01 is expected to provide valuable data for investigating its genomic population, enhancing understanding of genetic basis of P. aeruginosa species complex. Data description A complete genome of 6.3 Mb was obtained for P. aeruginosa YK01 by combining Illumina 150-bp short reads and Nanopore long reads. The assembly is fully complete with chromosomal genome size of 6,183,266 bp, presenting a GC content of 66.7%, and a plasmid with the size of 46,067 bp, presenting GC content of 59.0%. Predicted chromosomal genomic features include 5,709 CDS, 12 rRNAs, 63 tRNAs, 4 ncRNAs, and 5,788 genes. To our knowledge, this genome data represents the first complete genome of P. aeruginosa ST16, providing crucial information for further comparative genome analysis. |
| format | Article |
| id | doaj-art-cf950d1628274b10a7c3c6fcd760f5ee |
| institution | Kabale University |
| issn | 2730-6844 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Genomic Data |
| spelling | doaj-art-cf950d1628274b10a7c3c6fcd760f5ee2025-01-26T12:54:32ZengBMCBMC Genomic Data2730-68442025-01-012611410.1186/s12863-025-01298-2Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitisShuo Jiang0Mengmin Ye1Ke Liu2Huiluo Cao3Xiaoshan Lin4Department of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong KongDepartment of Laboratory Medicine, The First Affiliated Hospital, Sun Yat-Sen UniversityShenzhen Eye Hospital, Jinan University, Shenzhen Eye InstituteDepartment of Microbiology, Li Ka Shing Faculty of Medicine, The University of Hong KongThe Fifth Affiliated Hospital, Southern Medical UniversityAbstract Objectives Pseudomonas aeruginosa, a Gram-negative opportunistic pathogen, is frequently associated with multidrug resistance and global epidemic outbreaks, contributing significantly to morbidity and mortality in hospitalized patients. However, P. aeruginosa belonging to the sequence type (ST) 16 was rarely reported. Here, this report presents the complete genome sequence of YK01, a ST16 P. aeruginosa isolate from a patient with keratitis. The complete reference genome of P. aeruginosa YK01 is expected to provide valuable data for investigating its genomic population, enhancing understanding of genetic basis of P. aeruginosa species complex. Data description A complete genome of 6.3 Mb was obtained for P. aeruginosa YK01 by combining Illumina 150-bp short reads and Nanopore long reads. The assembly is fully complete with chromosomal genome size of 6,183,266 bp, presenting a GC content of 66.7%, and a plasmid with the size of 46,067 bp, presenting GC content of 59.0%. Predicted chromosomal genomic features include 5,709 CDS, 12 rRNAs, 63 tRNAs, 4 ncRNAs, and 5,788 genes. To our knowledge, this genome data represents the first complete genome of P. aeruginosa ST16, providing crucial information for further comparative genome analysis.https://doi.org/10.1186/s12863-025-01298-2Pseudomonas aeruginosaPA ST16Complete genome |
| spellingShingle | Shuo Jiang Mengmin Ye Ke Liu Huiluo Cao Xiaoshan Lin Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis BMC Genomic Data Pseudomonas aeruginosa PA ST16 Complete genome |
| title | Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis |
| title_full | Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis |
| title_fullStr | Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis |
| title_full_unstemmed | Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis |
| title_short | Complete genome sequence of Pseudomonas aeruginosa YK01, a sequence type 16 isolated from a patient with keratitis |
| title_sort | complete genome sequence of pseudomonas aeruginosa yk01 a sequence type 16 isolated from a patient with keratitis |
| topic | Pseudomonas aeruginosa PA ST16 Complete genome |
| url | https://doi.org/10.1186/s12863-025-01298-2 |
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