Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans
Abstract This genome announcement includes draft genomes from Claviceps purpurea s.lat., including C. arundinis, C. humidiphila and C. cf. spartinae. The draft genomes of Davidsoniella eucalypti, Quambalaria eucalypti and Teratosphaeria destructans, all three important eucalyptus pathogens, are pres...
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2018-12-01
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| Series: | IMA Fungus |
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| Online Access: | http://link.springer.com/article/10.5598/imafungus.2018.09.02.10 |
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| author | Brenda D. Wingfield Miao Liu Hai D. T. Nguyen Frances A. Lane Seamus W. Morgan Lieschen De Vos P. Markus Wilken Tuan A. Duong Janneke Aylward Martin P. A. Coetzee Kasia Dadej Z. Wilhelm De Beer Wendy Findlay Minette Havenga Miroslav Kolařík Jim G. Menzies Kershney Naidoo Olivia Pochopski Parivash Shoukouhi Quentin C. Santana Keith A. Seifert Nicole Soal Emma T. Steenkamp Catherine T. Tatham Margriet A. van der Nest Michael J. Wingfield |
| author_facet | Brenda D. Wingfield Miao Liu Hai D. T. Nguyen Frances A. Lane Seamus W. Morgan Lieschen De Vos P. Markus Wilken Tuan A. Duong Janneke Aylward Martin P. A. Coetzee Kasia Dadej Z. Wilhelm De Beer Wendy Findlay Minette Havenga Miroslav Kolařík Jim G. Menzies Kershney Naidoo Olivia Pochopski Parivash Shoukouhi Quentin C. Santana Keith A. Seifert Nicole Soal Emma T. Steenkamp Catherine T. Tatham Margriet A. van der Nest Michael J. Wingfield |
| author_sort | Brenda D. Wingfield |
| collection | DOAJ |
| description | Abstract This genome announcement includes draft genomes from Claviceps purpurea s.lat., including C. arundinis, C. humidiphila and C. cf. spartinae. The draft genomes of Davidsoniella eucalypti, Quambalaria eucalypti and Teratosphaeria destructans, all three important eucalyptus pathogens, are presented. The insect associate Grosmannia galeiformis is also described. The pine pathogen genome of Fusarium circinatum has been assembled into pseudomolecules, based on additional sequence data and by harnessing the known synteny within the Fusarium fujikuroi species complex. This new assembly of the F. circinatum genome provides 12 pseudomolecules that correspond to the haploid chromosome number of F. circinatum. These are comparable to other chromosomal assemblies within the FFSC and will enable more robust genomic comparisons within this species complex. |
| format | Article |
| id | doaj-art-be795c3d7d8a4b85889db68d107b0bac |
| institution | Kabale University |
| issn | 2210-6359 |
| language | English |
| publishDate | 2018-12-01 |
| publisher | BMC |
| record_format | Article |
| series | IMA Fungus |
| spelling | doaj-art-be795c3d7d8a4b85889db68d107b0bac2025-02-02T07:11:27ZengBMCIMA Fungus2210-63592018-12-019240141810.5598/imafungus.2018.09.02.10Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructansBrenda D. Wingfield0Miao Liu1Hai D. T. Nguyen2Frances A. Lane3Seamus W. Morgan4Lieschen De Vos5P. Markus Wilken6Tuan A. Duong7Janneke Aylward8Martin P. A. Coetzee9Kasia Dadej10Z. Wilhelm De Beer11Wendy Findlay12Minette Havenga13Miroslav Kolařík14Jim G. Menzies15Kershney Naidoo16Olivia Pochopski17Parivash Shoukouhi18Quentin C. Santana19Keith A. Seifert20Nicole Soal21Emma T. Steenkamp22Catherine T. Tatham23Margriet A. van der Nest24Michael J. Wingfield25Department of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaLaboratory of Fungal Genetics and Metabolism, Institute of Microbiology, Academy of Sciences of Czech RepublicMorden Research and Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaOttawa Research & Development Centre, Agriculture and Agri-Food CanadaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaDepartment of Biochemistry, Genetics and Microbiology (BGM), Forestry and Agricultural Biotechnology Institute (FABI), University of PretoriaAbstract This genome announcement includes draft genomes from Claviceps purpurea s.lat., including C. arundinis, C. humidiphila and C. cf. spartinae. The draft genomes of Davidsoniella eucalypti, Quambalaria eucalypti and Teratosphaeria destructans, all three important eucalyptus pathogens, are presented. The insect associate Grosmannia galeiformis is also described. The pine pathogen genome of Fusarium circinatum has been assembled into pseudomolecules, based on additional sequence data and by harnessing the known synteny within the Fusarium fujikuroi species complex. This new assembly of the F. circinatum genome provides 12 pseudomolecules that correspond to the haploid chromosome number of F. circinatum. These are comparable to other chromosomal assemblies within the FFSC and will enable more robust genomic comparisons within this species complex.http://link.springer.com/article/10.5598/imafungus.2018.09.02.10chromosome numbersergotismEucalyptuspine pitch cankerPoaceae |
| spellingShingle | Brenda D. Wingfield Miao Liu Hai D. T. Nguyen Frances A. Lane Seamus W. Morgan Lieschen De Vos P. Markus Wilken Tuan A. Duong Janneke Aylward Martin P. A. Coetzee Kasia Dadej Z. Wilhelm De Beer Wendy Findlay Minette Havenga Miroslav Kolařík Jim G. Menzies Kershney Naidoo Olivia Pochopski Parivash Shoukouhi Quentin C. Santana Keith A. Seifert Nicole Soal Emma T. Steenkamp Catherine T. Tatham Margriet A. van der Nest Michael J. Wingfield Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans IMA Fungus chromosome numbers ergotism Eucalyptus pine pitch canker Poaceae |
| title | Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans |
| title_full | Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans |
| title_fullStr | Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans |
| title_full_unstemmed | Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans |
| title_short | Nine draft genome sequences of Claviceps purpurea s.lat., including C. arundinis, C. humidiphila, and C. cf. spartinae, pseudomolecules for the pitch canker pathogen Fusarium circinatum, draft genome of Davidsoniella eucalypti, Grosmannia galeiformis, Quambalaria eucalypti, and Teratosphaeria destructans |
| title_sort | nine draft genome sequences of claviceps purpurea s lat including c arundinis c humidiphila and c cf spartinae pseudomolecules for the pitch canker pathogen fusarium circinatum draft genome of davidsoniella eucalypti grosmannia galeiformis quambalaria eucalypti and teratosphaeria destructans |
| topic | chromosome numbers ergotism Eucalyptus pine pitch canker Poaceae |
| url | http://link.springer.com/article/10.5598/imafungus.2018.09.02.10 |
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