Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics

Abstract Acute B-lymphoblastic leukemia (B-ALL) is a highly heterogeneous hematologic malignancy, characterized by significant molecular differences among patients as the disease progresses. While the PI3K-Akt signaling pathway and metabolic reprogramming are known to play crucial roles in B-ALL, th...

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Main Authors: Yin Le, Shicong Zhu, Hongling Peng, Zhihua Wang
Format: Article
Language:English
Published: Nature Portfolio 2025-01-01
Series:Scientific Reports
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Online Access:https://doi.org/10.1038/s41598-025-87684-3
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author Yin Le
Shicong Zhu
Hongling Peng
Zhihua Wang
author_facet Yin Le
Shicong Zhu
Hongling Peng
Zhihua Wang
author_sort Yin Le
collection DOAJ
description Abstract Acute B-lymphoblastic leukemia (B-ALL) is a highly heterogeneous hematologic malignancy, characterized by significant molecular differences among patients as the disease progresses. While the PI3K-Akt signaling pathway and metabolic reprogramming are known to play crucial roles in B-ALL, the interactions between lipid metabolism, immune pathways, and drug resistance remain unclear. In this study, we performed multi-omics analysis on different patient cohorts (newly diagnosed, relapsed, standard-risk, and poor-risk) to investigate the molecular characteristics associated with metabolism, signaling pathways, and immune regulation in B-ALL. Our findings indicate that the PI3K-Akt signaling pathway is significantly enriched across all groups, highlighting its critical role in B-ALL pathogenesis and progression. Furthermore, metabolomic analysis revealed that lipid metabolism, ferroptosis, and glutathione metabolism are closely linked to disease progression. Notably, in relapsed patients, dysregulated lipid metabolism and the activation of antioxidant mechanisms may contribute to treatment resistance. Immune-related pathways, such as the complement system and coagulation cascade, were also significantly enriched in patients with B-ALL. This suggests that these pathways, alongside the PI3K-Akt pathway, play a role in forming the tumor microenvironment, thereby promoting disease progression and relapse. Based on these findings, this study provides novel potential therapeutic targets for the personalized treatment of B-ALL and lays the foundation for further development of PI3K-Akt pathway inhibitors and immunometabolism-targeted therapies.
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spelling doaj-art-bdede720432343f0b7210ea6c41a04942025-01-26T12:29:55ZengNature PortfolioScientific Reports2045-23222025-01-0115111310.1038/s41598-025-87684-3Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomicsYin Le0Shicong Zhu1Hongling Peng2Zhihua Wang3Division of Hematology, Second Xiang-ya Hospital, Central South UniversityDepartment of Geriatrics, Second Xiangya Hospital, Central South UniversityDivision of Hematology, Second Xiang-ya Hospital, Central South UniversityDivision of Hematology, Second Xiang-ya Hospital, Central South UniversityAbstract Acute B-lymphoblastic leukemia (B-ALL) is a highly heterogeneous hematologic malignancy, characterized by significant molecular differences among patients as the disease progresses. While the PI3K-Akt signaling pathway and metabolic reprogramming are known to play crucial roles in B-ALL, the interactions between lipid metabolism, immune pathways, and drug resistance remain unclear. In this study, we performed multi-omics analysis on different patient cohorts (newly diagnosed, relapsed, standard-risk, and poor-risk) to investigate the molecular characteristics associated with metabolism, signaling pathways, and immune regulation in B-ALL. Our findings indicate that the PI3K-Akt signaling pathway is significantly enriched across all groups, highlighting its critical role in B-ALL pathogenesis and progression. Furthermore, metabolomic analysis revealed that lipid metabolism, ferroptosis, and glutathione metabolism are closely linked to disease progression. Notably, in relapsed patients, dysregulated lipid metabolism and the activation of antioxidant mechanisms may contribute to treatment resistance. Immune-related pathways, such as the complement system and coagulation cascade, were also significantly enriched in patients with B-ALL. This suggests that these pathways, alongside the PI3K-Akt pathway, play a role in forming the tumor microenvironment, thereby promoting disease progression and relapse. Based on these findings, this study provides novel potential therapeutic targets for the personalized treatment of B-ALL and lays the foundation for further development of PI3K-Akt pathway inhibitors and immunometabolism-targeted therapies.https://doi.org/10.1038/s41598-025-87684-3B-ALLMulti-omics analysisPI3K-Akt signaling pathwayImmune pathwaysLipid metabolismTreatment strategy
spellingShingle Yin Le
Shicong Zhu
Hongling Peng
Zhihua Wang
Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
Scientific Reports
B-ALL
Multi-omics analysis
PI3K-Akt signaling pathway
Immune pathways
Lipid metabolism
Treatment strategy
title Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
title_full Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
title_fullStr Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
title_full_unstemmed Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
title_short Unveiling the omics tapestry of B-acute lymphoblastic leukemia: bridging genomics, metabolomics, and immunomics
title_sort unveiling the omics tapestry of b acute lymphoblastic leukemia bridging genomics metabolomics and immunomics
topic B-ALL
Multi-omics analysis
PI3K-Akt signaling pathway
Immune pathways
Lipid metabolism
Treatment strategy
url https://doi.org/10.1038/s41598-025-87684-3
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AT shicongzhu unveilingtheomicstapestryofbacutelymphoblasticleukemiabridginggenomicsmetabolomicsandimmunomics
AT honglingpeng unveilingtheomicstapestryofbacutelymphoblasticleukemiabridginggenomicsmetabolomicsandimmunomics
AT zhihuawang unveilingtheomicstapestryofbacutelymphoblasticleukemiabridginggenomicsmetabolomicsandimmunomics