THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS
This paper presents the results of the reconstruction and analysis of gene regulatory network of the circadian clock in mammals. Application of graph theory methods makes it possible to analyze the structure of the gene network and identify the central component of circadian clock regulation, which...
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| Format: | Article |
| Language: | English |
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Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2015-01-01
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| Series: | Вавиловский журнал генетики и селекции |
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| Online Access: | https://vavilov.elpub.ru/jour/article/view/323 |
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| author | O. A. Podkolodnaya N. N. Podkolodnaya N. L. Podkolodnyy |
| author_facet | O. A. Podkolodnaya N. N. Podkolodnaya N. L. Podkolodnyy |
| author_sort | O. A. Podkolodnaya |
| collection | DOAJ |
| description | This paper presents the results of the reconstruction and analysis of gene regulatory network of the circadian clock in mammals. Application of graph theory methods makes it possible to analyze the structure of the gene network and identify the central component of circadian clock regulation, which includes the basic regulatory circuits passing through the key element of the circadian clock, the Clock/Bmal1 protein. Cluster analysis has revealed subsystems with clear biological interpretation, which are involved in the functioning of the circadian clock by interacting with the central component. This structural model, which includes the central component and functional subsystems that interact with the central component, can provide grounds for the construction of a mathematical model of the dynamics of the gene network regulating the circadian rhythm. |
| format | Article |
| id | doaj-art-b375865d1957442db6940b8f03381a35 |
| institution | Kabale University |
| issn | 2500-3259 |
| language | English |
| publishDate | 2015-01-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj-art-b375865d1957442db6940b8f03381a352025-02-01T09:58:01ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592015-01-01184/2928938306THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSISO. A. Podkolodnaya0N. N. Podkolodnaya1N. L. Podkolodnyy2Institute of Cytology and Genetics SB RAS, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, RussiaThis paper presents the results of the reconstruction and analysis of gene regulatory network of the circadian clock in mammals. Application of graph theory methods makes it possible to analyze the structure of the gene network and identify the central component of circadian clock regulation, which includes the basic regulatory circuits passing through the key element of the circadian clock, the Clock/Bmal1 protein. Cluster analysis has revealed subsystems with clear biological interpretation, which are involved in the functioning of the circadian clock by interacting with the central component. This structural model, which includes the central component and functional subsystems that interact with the central component, can provide grounds for the construction of a mathematical model of the dynamics of the gene network regulating the circadian rhythm.https://vavilov.elpub.ru/jour/article/view/323circadian clockgene networkgraph analysis methods |
| spellingShingle | O. A. Podkolodnaya N. N. Podkolodnaya N. L. Podkolodnyy THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS Вавиловский журнал генетики и селекции circadian clock gene network graph analysis methods |
| title | THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS |
| title_full | THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS |
| title_fullStr | THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS |
| title_full_unstemmed | THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS |
| title_short | THE MAMMALIAN CIRCADIAN CLOCK: GENE REGULATORY NETWORK AND THEIR COMPUTER ANALYSIS |
| title_sort | mammalian circadian clock gene regulatory network and their computer analysis |
| topic | circadian clock gene network graph analysis methods |
| url | https://vavilov.elpub.ru/jour/article/view/323 |
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