De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies
Abstract Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omic...
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| Format: | Article |
| Language: | English |
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Nature Portfolio
2025-01-01
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| Series: | Scientific Data |
| Online Access: | https://doi.org/10.1038/s41597-025-04496-w |
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| author | V. G. Vysakh Sandhya Sukumaran Gopalakrishnan A. |
| author_facet | V. G. Vysakh Sandhya Sukumaran Gopalakrishnan A. |
| author_sort | V. G. Vysakh |
| collection | DOAJ |
| description | Abstract Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omics resources are still scarce. We generated a gill-specific reference transcriptome for Perna viridis using 292 million short Illumina reads from eight pooled gill tissue samples isolated from twenty-four individuals. The Trinity assembler generated 438,842 transcripts with an N50 of 1,958 bp. Several databases were employed in the annotation process. This dataset greatly expands the omics resources of bivalve databases and advances our knowledge of transcriptomics, molecular biology, environmental toxicology, and cancer research. |
| format | Article |
| id | doaj-art-b2c28ef8e6af49f9a8860f98ad68d50c |
| institution | Kabale University |
| issn | 2052-4463 |
| language | English |
| publishDate | 2025-01-01 |
| publisher | Nature Portfolio |
| record_format | Article |
| series | Scientific Data |
| spelling | doaj-art-b2c28ef8e6af49f9a8860f98ad68d50c2025-01-26T12:14:48ZengNature PortfolioScientific Data2052-44632025-01-011211910.1038/s41597-025-04496-wDe novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studiesV. G. Vysakh0Sandhya Sukumaran1Gopalakrishnan A.2Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO.Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO.Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO.Abstract Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omics resources are still scarce. We generated a gill-specific reference transcriptome for Perna viridis using 292 million short Illumina reads from eight pooled gill tissue samples isolated from twenty-four individuals. The Trinity assembler generated 438,842 transcripts with an N50 of 1,958 bp. Several databases were employed in the annotation process. This dataset greatly expands the omics resources of bivalve databases and advances our knowledge of transcriptomics, molecular biology, environmental toxicology, and cancer research.https://doi.org/10.1038/s41597-025-04496-w |
| spellingShingle | V. G. Vysakh Sandhya Sukumaran Gopalakrishnan A. De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies Scientific Data |
| title | De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies |
| title_full | De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies |
| title_fullStr | De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies |
| title_full_unstemmed | De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies |
| title_short | De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies |
| title_sort | de novo transcriptome assembly of the perna viridis a novel invertebrate model for ecotoxicological studies |
| url | https://doi.org/10.1038/s41597-025-04496-w |
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